Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 164 / 3e-47 S-locus lectin protein kinase family protein (.1) AT4G23180 155 / 1e-44 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G11410 154 / 8e-44 S-locus lectin protein kinase family protein (.1) AT1G65790 148 / 1e-41 ARK1 receptor kinase 1 (.1) AT1G65800 147 / 2e-41 ARK2 receptor kinase 2 (.1) AT4G23150 145 / 4e-41 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G21380 145 / 1e-40 ARK3 receptor kinase 3 (.1) AT4G00970 144 / 2e-40 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G23140 142 / 9e-40 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23230 139 / 4e-39 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005137 [exp] 350 / 8e-125 AT1G11340 225 / 1e-68 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 263 / 9e-84 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 245 / 4e-77 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 232 / 5e-72 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005053 [exp] 218 / 3e-68 AT1G11410 299 / 1e-90 S-locus lectin protein kinase family protein (.1) Lus10041679 [exp] 168 / 6e-50 AT1G11340 417 / 1e-137 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 171 / 9e-50 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 167 / 4e-48 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10034637 [exp] 166 / 4e-48 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035850 [exp] 177 / 1e-54 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.011G036100 [exp] 182 / 7e-54 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 179 / 1e-52 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 178 / 2e-52 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 178 / 2e-52 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036466 [exp] 166 / 2e-50 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.004G028400 [exp] 158 / 1e-49 AT4G23140 206 / 3e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) Potri.004G028532 [exp] 158 / 1e-49 AT4G23140 205 / 9e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) Potri.004G028300 [exp] 164 / 2e-47 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 157 / 5e-45 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025242 pacid=23157359 polypeptide=Lus10025242 locus=Lus10025242.g ID=Lus10025242.BGIv1.0 annot-version=v1.0 ATGGCTAGAATTCTGGACAGCAACCGGATTGATGAGAAGGCCAGCAGAGTGTGTGTGGAACACGGTTATATGTCACCAGAGTATGTAATCTTCGGAAGGT ATTCAGCGAAACTCGATGTCTACAGCTTTGGGGTGATATTGCTCGAAACAATCACCGGGAAGAAGATCACCGGGTTCTTCCATGAAGATCCTTCCCTGAG CCTGATCTGCCATGTGTGGGAGCTATGGCGGGCAGGTAGAGCCACCGAGGCAATCGATCCGTCAATATCAATCAAACACTCCTCCCCGAACGAGGTGCTG CGGTGCATCCAAATCGGACTATTGTGCGTGGAGGAAAATGCAGCGGACCGACCCGATATGTTGTCAGTGGTTCTCATGTTGAACAGCGAAACCACGCCTG TCCCATCTCCCCAAAAACCTGCGTTTGTTGCTTCTGTGAAACCCAAGCTACCATTGACGAAAGAACAGACGACCTATTCCCTAAACGAGATGTCGTTCTC AGGGATCCTTAGTCGTTGA
AA sequence Show only first row Show all	>Lus10025242 pacid=23157359 polypeptide=Lus10025242 locus=Lus10025242.g ID=Lus10025242.BGIv1.0 annot-version=v1.0 MARILDSNRIDEKASRVCVEHGYMSPEYVIFGRYSAKLDVYSFGVILLETITGKKITGFFHEDPSLSLICHVWELWRAGRATEAIDPSISIKHSSPNEVL RCIQIGLLCVEENAADRPDMLSVVLMLNSETTPVPSPQKPAFVASVKPKLPLTKEQTTYSLNEMSFSGILSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10025242 [exp]	0	1

Compare expression of checked genes

Lus10025242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.