Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01830 744 / 0 ARM repeat superfamily protein (.1) AT1G29340 379 / 8e-122 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G46510 268 / 4e-80 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 261 / 4e-78 ATPUB14 plant U-box 14 (.1) AT1G60190 262 / 7e-78 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT5G42340 243 / 5e-71 PUB15 Plant U-Box 15 (.1) AT1G10560 230 / 9e-66 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT1G71020 222 / 9e-65 ARM repeat superfamily protein (.1.2) AT1G23030 222 / 1e-63 PUB11 ARM repeat superfamily protein (.1) AT2G28830 216 / 2e-59 AtPUB12 PLANT U-BOX 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006090 [exp] 1306 / 0 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10007317 [exp] 421 / 9e-138 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10007511 [exp] 378 / 8e-122 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 362 / 8e-116 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10029163 [exp] 295 / 6e-90 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10013001 [exp] 278 / 2e-83 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030628 [exp] 251 / 1e-73 AT1G60190 553 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10016565 [exp] 247 / 3e-72 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 244 / 2e-71 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107600 [exp] 937 / 0 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.016G134000 [exp] 920 / 0 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.011G071400 [exp] 419 / 2e-137 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G061800 [exp] 413 / 6e-135 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.008G071600 [exp] 361 / 3e-115 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G185900 [exp] 346 / 2e-109 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.012G078900 [exp] 308 / 3e-95 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.015G074200 [exp] 292 / 6e-89 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 265 / 2e-79 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 254 / 8e-75 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10025244 pacid=23157321 polypeptide=Lus10025244 locus=Lus10025244.g ID=Lus10025244.BGIv1.0 annot-version=v1.0 ATGGTGCAATCCATGACAGTTTCCCCTAGGGCAATCTTCCCGCCCAGGAAGCGGCGCCCTTCCGCCGGAGCTTTCATCCCACCAAATTTCGCCGACCAGA AGCTCGTCCAGTCGCTCCTCATCCTATCCCAGGAAATCTCCTCCATCCAGCCTTTCCAATTCCTCCTCAGGCGAAATTCCCAATCCATAATTCGCAAGAC CAAGCTCCTCTCCATCCTCTTCGACGAGCTCATCCGGAATCCAATCCTTATCCTCTCCCCGACGCTGCTCTGCTTCGAAGAAATGTACATACTTCTACAG AGAATCAGAACTCTAATCGAGGACTGCTCCAACGGCAGCAAGATGTGGCTGCTTATGCAGATCGAGTCCGTCGCCAACGGATTTCACGAACTCACCGTTG AATTGTCAACTCTGTTGGACATCTTCCCGGTCAACGAGGTTGACCTCTCGGAAGACGTTCAGGAGCTTGTTGTCTTGATCAGGAAGCAGTGCTCCTTGGT CAAGCCGTATCTAGATCCCACCGATTGTAATCTCCGGCGTGAGGTTCTCACGATGCTTGACCGGATCAAGAGAGAGATCGTCCCAGATCATTCCAAGTTA TCAGCGATATTTGACCAAACCGGGCTGCAGACCGCCGCCAGGTGTACCGACGAGATTGAGTGTTTGGAAGACGAGGTTCAGAATCAAACAGATGAGAAAT CCAAATCGGAGGTTATCGCTTTGATCGGGCTCGTCCGATACGCCAAGTGCGTTCTATACGGCGCGTCGTCCCCAGACTCCGATGGGCAGCGACGTAATGT GACGTCGTCCTCGGCGGAGGCGATCAACAATATTCCACCGGATTTCCGGTGCCCGATTAGCTTAGACTTGATGCGGGACCCGGTTGTCGTGGCGACGGGG CAGACGTACGATCGGGAGTCTATCAGTTTGTGGATTGATTCGGGGCATAACACGTGTCCGAAGACAGGTCAGAGCTTGGCCCACACGAACCTCATCTCTA ACCGAGCTTTGAAGAATCTGATAAGCATGTGGTGCCGTGAGCAAAAAATACCGTTCGAAGCGACGGAAAATACTCAAAGAAGTAACGGCGTCATCCCGAA TAAAGCAGCCATGGAAGCTACGAGGATGACGGTGTCGTTTCTGACCAAGGAGCTTTCCGGCTCGCAGTCAATGGAAGCTGCTAACGGTGTCGTTTACGAG CTTCGTGCGCTGGCGAAGACAAACTCTGACAGCCGATCCTTCATTTCCGAAGCTGGAGCAATACCTCTATTGATTCGGTACCTAGGTTCGGATGTTGGCT CGGTGCTCCCGAGCCTCCAAGTCAATGCCGTAACGACTATTCTCAATCTATCAATTCTCGAAGCAAACAAGACCCAAATCATGGAGACCGACGGAGCACT GAACGGAATTATCGAAGTACTCCGATCCGGCGCCACGTGGGAGGCGAAGGGAAACGCGGCAGCGACCATTTTCAGCTTATCCGGCATTAACTCGTACAGG AAGCGGCTAGGAAGGAAGAATCGGGTGATTAAGGGTTTGATGGATTTAGCTCAACTGGGGCCGAATTCATCAAAACGAGACGCATTGGTAGCAATTCTGA CTTTAGCCGGAGACAGAGATACCGTCGGGAAGTTGATCGAAGCAGGGGTGGTGGAGATTGTTACGGGAGTATTGGACTCACTTCCAGAGGAAGCCGTGAC GATACTTGAAGTCGTCGTCAAGAAAGGCGGATTGGCCGCAATCGCCGCGGTATACAACAAGATTAAGAAACTGGGGGTTTTGTTGAGGGAAGGATCGGAA ACTTCCCGGGAAAGCGCCGCCGCTACCCTGGTGACAATTTGTCGGAAAGGGGGATCGGAGATGGTGGCGGAGCTTGCCGCAATGCCCGGAATAGAGAGGA TAATCTGGGAATTGATGGGTACGGGAACAGTTAGGGCAAGAAGAAAGGCGGCTACCCTGTTGAGGATTCTCCGAAGATGGGCAGCCGGTTTGGACCTGAA CCCAACCCCGACGATAACATCAGCAACAACAACCGTAATGTAA
AA sequence Show only first row Show all	>Lus10025244 pacid=23157321 polypeptide=Lus10025244 locus=Lus10025244.g ID=Lus10025244.BGIv1.0 annot-version=v1.0 MVQSMTVSPRAIFPPRKRRPSAGAFIPPNFADQKLVQSLLILSQEISSIQPFQFLLRRNSQSIIRKTKLLSILFDELIRNPILILSPTLLCFEEMYILLQ RIRTLIEDCSNGSKMWLLMQIESVANGFHELTVELSTLLDIFPVNEVDLSEDVQELVVLIRKQCSLVKPYLDPTDCNLRREVLTMLDRIKREIVPDHSKL SAIFDQTGLQTAARCTDEIECLEDEVQNQTDEKSKSEVIALIGLVRYAKCVLYGASSPDSDGQRRNVTSSSAEAINNIPPDFRCPISLDLMRDPVVVATG QTYDRESISLWIDSGHNTCPKTGQSLAHTNLISNRALKNLISMWCREQKIPFEATENTQRSNGVIPNKAAMEATRMTVSFLTKELSGSQSMEAANGVVYE LRALAKTNSDSRSFISEAGAIPLLIRYLGSDVGSVLPSLQVNAVTTILNLSILEANKTQIMETDGALNGIIEVLRSGATWEAKGNAAATIFSLSGINSYR KRLGRKNRVIKGLMDLAQLGPNSSKRDALVAILTLAGDRDTVGKLIEAGVVEIVTGVLDSLPEEAVTILEVVVKKGGLAAIAAVYNKIKKLGVLLREGSE TSRESAAATLVTICRKGGSEMVAELAAMPGIERIIWELMGTGTVRARRKAATLLRILRRWAAGLDLNPTPTITSATTTVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	0	1
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	1.0	0.9463
AT5G17165			unknown protein		Lus10002135 [exp]	2.0	0.9189
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	2.2	0.8791
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	3.5	0.8660
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	3.5	0.8937
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	4.6	0.8620
AT2G15220			Plant basic secretory protein ...		Lus10001360 [exp]	4.7	0.8517
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	5.7	0.8864
AT3G24535			unknown protein		Lus10023639 [exp]	6.7	0.8461
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	7.7	0.8534

Compare expression of checked genes

Lus10025244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.