Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01820 503 / 1e-177 PKS24, CIPK14, ATSR1, SnRK3.15, ATCIPK14 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) AT2G30360 494 / 6e-174 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT4G18700 481 / 3e-168 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 457 / 5e-159 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 449 / 4e-155 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G34180 428 / 3e-147 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT2G38490 423 / 8e-146 CIPK22, SnRK3.19 SNF1-RELATED PROTEIN KINASE 3.19, CBL-interacting protein kinase 22 (.1) AT5G45820 421 / 2e-145 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G10930 415 / 7e-143 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT4G30960 410 / 6e-141 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009103 [exp] 875 / 0 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10022748 [exp] 607 / 0 AT2G30360 491 / 3e-173 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10009925 [exp] 511 / 7e-180 AT2G30360 553 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10015275 [exp] 449 / 4e-155 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10036280 [exp] 424 / 2e-146 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 423 / 4e-146 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042229 [exp] 423 / 9e-146 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 417 / 2e-143 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 415 / 1e-142 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133900 [exp] 603 / 0 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.013G155600 [exp] 541 / 0 AT2G30360 536 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.019G128100 [exp] 538 / 0 AT2G30360 531 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.011G067600 [exp] 466 / 2e-161 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 455 / 2e-157 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G186200 [exp] 431 / 3e-149 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 429 / 4e-148 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 429 / 7e-148 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 422 / 1e-145 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 421 / 8e-145 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025245 pacid=23157327 polypeptide=Lus10025245 locus=Lus10025245.g ID=Lus10025245.BGIv1.0 annot-version=v1.0 ATGGCGAGCGATTGGGGAGCAGCGGTTGAATCATCCGGCGAAATCTCGCCGGATTCCTACCTATTCGGAAAATACGAAATCGGGAAGCTGCTCGGATGCG GAGCCTTCGCCAAAGTATACCACGGCCGCAACGTACTGACAGGGCAGAGTGTAGCAATCAAGGCCGTGAGCAAAAACAAGGTCCAAAAGGGAGGGCTTAT GGCGCACATCAAGAGGGAGATCTCTATCATGCGCCGCCTCCACCACCCGAATGTCGTGCGCCTCTTCGAGGTCCTCGCCACCAAATCGAAGATCTACTTC GTGATGGAATACGCCAAAGGAGGAGAGCTCTTCACCAAAATCGCCAAAGGCCGATTCAGCGAAGCTCTCAGTAGGAAGTACTTCCAGCAGCTGATTACCT CAATCGGTTACTGCCACGCCAGGGGAGTGTTCCACCGTGATTTGAAGCCGGAGAATCTCCTCCTCGACGAGAATTGGAATCTCAAAGTCTCCGATTTCGG ACTCAGCGCCGTCCACGAACAGATACAGTCCGACGGCCTCCTTCACACCTTATGTGGGACCCCTGCTTACGTGGCCCCCGAAATTCTCGCGAAGAAGGGA TACGACGGCGCCAAGGTCGATATCTGGTCCTGTGGTGTCATCTTGTTCGTCCTCGTCGCCGGTTACCTTCCCTTCAACGACACAAACCTCATGGCGATGT ACAAGAAGATTTACAAAGGAGATTTCCGATGTCCGAAGTGGACTTCGCCGGAGCTCCGCCGCTTCCTCTTCCGGTTACTCGATTCCAATCCTGATACGAG GATCACCGTCGACGAGATCCTCAGAGATCCTTGGTTCAAGATGGATTACAAGGGGACGACGAATTACCAGGTTGTCCATGATTTTGAATTCAAGAGCCGG ATGCTAGAAGACGACGACGGCACCAGCCGGGAGCAGAGTTTGAACGCCTTTGACTTGATTTCTTTCTCGTCCGGATTCGACCTGTCACGGATGTTTAACG ACTCCGACATATCCACCTGCGGCGAGAGGTTTATATCGGTGGAATCCCCGGAGAGAATTATGGAGAGAGTTGAGGAGGTGGCGAAGGAAGAGCAAGGAGT AGTTACAGTGACGGAAAGGTACCGGTCCGGGTTGAAGCTGGAAGGACGGAACGGTAACTTCGTGATGTTGCTCGAGATTTACCGGTTGACGGACAAATTA GTTGTGTTTGAGGTGAGGGAGAAGGAAGTAAATGTGGTTCCAGGTCATGGAATCTGGAAACACAAGCTCCGGCCGCAGCTCCGGCAATTGGTTTACCAAT ACAAGGCCGGTGCCTGA
AA sequence Show only first row Show all	>Lus10025245 pacid=23157327 polypeptide=Lus10025245 locus=Lus10025245.g ID=Lus10025245.BGIv1.0 annot-version=v1.0 MASDWGAAVESSGEISPDSYLFGKYEIGKLLGCGAFAKVYHGRNVLTGQSVAIKAVSKNKVQKGGLMAHIKREISIMRRLHHPNVVRLFEVLATKSKIYF VMEYAKGGELFTKIAKGRFSEALSRKYFQQLITSIGYCHARGVFHRDLKPENLLLDENWNLKVSDFGLSAVHEQIQSDGLLHTLCGTPAYVAPEILAKKG YDGAKVDIWSCGVILFVLVAGYLPFNDTNLMAMYKKIYKGDFRCPKWTSPELRRFLFRLLDSNPDTRITVDEILRDPWFKMDYKGTTNYQVVHDFEFKSR MLEDDDGTSREQSLNAFDLISFSSGFDLSRMFNDSDISTCGERFISVESPERIMERVEEVAKEEQGVVTVTERYRSGLKLEGRNGNFVMLLEIYRLTDKL VVFEVREKEVNVVPGHGIWKHKLRPQLRQLVYQYKAGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025245 [exp]	0	1
AT2G44600			unknown protein		Lus10019505 [exp]	1.4	0.9065
AT5G16200			50S ribosomal protein-related ...		Lus10028496 [exp]	2.2	0.8931
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10029211 [exp]	4.5	0.8773
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	4.7	0.9003
AT2G47590		PHR2	photolyase/blue-light receptor...		Lus10007880 [exp]	6.9	0.8685
AT2G21180			unknown protein		Lus10007573 [exp]	7.2	0.8949
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10010723 [exp]	10.8	0.8428
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	12.0	0.8955
AT1G72180			Leucine-rich receptor-like pro...		Lus10003503 [exp]	21.7	0.8729
AT1G12500			Nucleotide-sugar transporter f...		Lus10006684 [exp]	25.5	0.8672

Compare expression of checked genes

Lus10025245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.