Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51650 622 / 0 unknown protein AT3G51640 615 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009100 [exp] 1365 / 0 AT3G51650 721 / 0.0 unknown protein Lus10025250 [exp] 1270 / 0 AT3G51650 686 / 0.0 unknown protein Lus10009097 [exp] 776 / 0 AT3G51650 360 / 2e-114 unknown protein Lus10009098 [exp] 343 / 1e-113 AT3G51650 294 / 3e-95 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133700 [exp] 900 / 0 AT3G51650 706 / 0.0 unknown protein Potri.006G107500 [exp] 899 / 0 AT3G51650 671 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025247 pacid=23157309 polypeptide=Lus10025247 locus=Lus10025247.g ID=Lus10025247.BGIv1.0 annot-version=v1.0 ATGTGTACGCTCTGTGTGATCCAGAAGTGGTCTCGTCGGATTGCTACGATGCTGCCTTGGTTAGTGATTCCTCTTATAGGGTTGTGGGCTTTGTCTCAAC TCCTTCCCCCTGCTTTCCGGTTCGAGATTACCTCCCCAAGACTTGCTTGTGTGTTTGTGCTTTTGATTACTCTCTTCTGGTACGAGATTTTGATGCCTCA GCTGTCTGCTTGGCGTGTGAGGAGGAATGCCCAGTTAAGGGAGAGGAAGAGGTTTGAAGCTATTGAATTGCAAAAGCTCCGAAAAACTGCTACTAAAAGG TGTAGAAATTGCTTGACTCCTTATAAGGATCAGAATCCGGGAGGTGGCAAGTTTATGTGTGCTTACTGTGGTCATATATCCAAGAGGCCAGTATTGGAAG TGGCTGTACCTCCTGGATTAGGGAGTCCAAATTCTGGGATTTGTAAAGACTTGGTTGGAAAGGGTGGAAAAATATTAAATGGCAAGGCATCATCTGATAA TGGATGGGTTTGCAGTCAGGATTGGTTAGAGAATGGTGGCTGGGTTGGGGGGTCTGTTGCTGGGAAGTCTAGTTATTGGCAGAGAAGTGGAGGTGGTGGC CGTGGTATATTTGTAGCAGATGATGACTGTTTGGCAGAGAACTCTTACTTGCGCTTTGTAATTTTTGGGTGCAAACTACTGACTTCATTTTTCTTGAGCA TTAGGTGGCTTCTGAGAAAGGTTTTTAGGATTAGTTCGTCAAAGGACAATGCTTCTTCTAATGCAGGCCATAAGGGAGCCATGGCTAAAAGAGGAGAGAA TGGGATGAACCTTTCTGAGAGTAGAGTGGAGAAAGCTCGCAGGAAAGCCGAGGAGAAGAGGCAGGCTAGGTTAGAGAGGGAGCTTTTGGAGGAGGAAGAG AAGAAACAGCGGGAAGAGGTTGCTAGGTTAGTCGAGGAGCGCCGAAGGTTGAGGGATGAGAAAATGGAGGCTGAGAAAGACCGGAACAAGCTGTCATCAC CGACTAGCAAATATCATAAAAGTGAAGCAGAGAAGAAGCGCCAAGAGAGAAGAAGAGATAAAGATAAAGGATCCAGTAAGAGTAACTCTGATGTGGAAGA GATGGAAAAACGTGCTGGGAAAGAAGGTGCAAGCAGAAAAGATATTGACAAGAAGAGTGATGTTGAGAAGAGGGAACCACAAAAGCTCAGTACATCTATA CACAATTTTGGCCGTGGAAATGCTGGAACTAGGTACCTTGACAGGATGAAGGGAACGTTTTTATCTCCTTCGAGAGCTTTTAGCGGAAACGGTTTCTTTG GACGTAACGTGAACAATCCTGCTGCTGCTACGAAAGAAGTGAAGTTCAACAGCTCTGCGGATCAACTTCACACTTCTGTCCAGAGAAGAGATATATGTCC ACTTGGTCCGGTTGGGAAATCAAGTATCAATTCCAACGATAAAAATGCTAACCAACCTGTACCATCAGAACAGCAAAGGGCGGGACCTAAGAAGTCATGG CAGCAATTATTTACGCGTTCTTCGTCCTCAAGTACTAATGTCATTGGCCGGCCGAATCCAAAACCTCAGGCAGAGTTGCAGAAGCCTCAGTTACCAGGAC AAACATCAATGATACAGTCATTTGATAATCCTATTCATTTTGGGCTGCCATCGCCATTTTCTACCCTCATGTATCCTGATGTCTCCAGCAGATCTAGTTT AGGTTTCTCACCTCCCATTGACTCCAGTGCTCTCCGGATTTCCGAAGAACTGGAGTGTTTCGAGGACCCTTGCTATGTTCCTGATCCCATATCATTACTT GGGCCTGTCTCAGAGTCCCTGGATAATTTCCAGCTGGACTTCGTAGCTGGGTTTCCATTAGATAGAACACAACCTCTAAAAAAGTCAGCTGGATCCCCTG AAGTGAGCAAGCCATCTCCAATCGAGTCTCCATTATCTCGTCGAAATTCTGATGAAAAGAACAACTGGTTCCCCACCACTCCCAGGACTCGAGATGTGAC TGCCCAATATGTTGACGATGTGCATAAAAATGAGGCAGGAACATGGCAAATGTGGAAGAGTACTCCTCTTTGTCAAGATGGTCTTGGTTTGGTTGGGGGC TCAGGGAGCTGGCTTTTTCCATCAGAGAGGAGTATTTCAGCCGAAGAAGATATTTTTTCGCATCCTTCGTCTCAGAAGAATGTAACATCAATGTTTTCGA CAGAAGACAAAGCTCTTTTAGGGAATCCCTCTCCTCAGAATGGTTATCTTGGTAATGGCCACAATGGGGTGTTCAGTCCTGTCACTAGCTCGCATGACAA TGAACCATGGTTGCAGAATGCCTTTTACCATCCACTTTCTGGCAACGAAGGTCATCTCTTTGTCAAAACCGAGGAAGATAATATTCAAGAAAAGATTGGT TTTGGCAGCCCACATAGAGCAACTTCCAATCTTTCATTTGAGATGCATCCTCAAAATGGTTGGTCCAAGTGA
AA sequence Show only first row Show all	>Lus10025247 pacid=23157309 polypeptide=Lus10025247 locus=Lus10025247.g ID=Lus10025247.BGIv1.0 annot-version=v1.0 MCTLCVIQKWSRRIATMLPWLVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLITLFWYEILMPQLSAWRVRRNAQLRERKRFEAIELQKLRKTATKR CRNCLTPYKDQNPGGGKFMCAYCGHISKRPVLEVAVPPGLGSPNSGICKDLVGKGGKILNGKASSDNGWVCSQDWLENGGWVGGSVAGKSSYWQRSGGGG RGIFVADDDCLAENSYLRFVIFGCKLLTSFFLSIRWLLRKVFRISSSKDNASSNAGHKGAMAKRGENGMNLSESRVEKARRKAEEKRQARLERELLEEEE KKQREEVARLVEERRRLRDEKMEAEKDRNKLSSPTSKYHKSEAEKKRQERRRDKDKGSSKSNSDVEEMEKRAGKEGASRKDIDKKSDVEKREPQKLSTSI HNFGRGNAGTRYLDRMKGTFLSPSRAFSGNGFFGRNVNNPAAATKEVKFNSSADQLHTSVQRRDICPLGPVGKSSINSNDKNANQPVPSEQQRAGPKKSW QQLFTRSSSSSTNVIGRPNPKPQAELQKPQLPGQTSMIQSFDNPIHFGLPSPFSTLMYPDVSSRSSLGFSPPIDSSALRISEELECFEDPCYVPDPISLL GPVSESLDNFQLDFVAGFPLDRTQPLKKSAGSPEVSKPSPIESPLSRRNSDEKNNWFPTTPRTRDVTAQYVDDVHKNEAGTWQMWKSTPLCQDGLGLVGG SGSWLFPSERSISAEEDIFSHPSSQKNVTSMFSTEDKALLGNPSPQNGYLGNGHNGVFSPVTSSHDNEPWLQNAFYHPLSGNEGHLFVKTEEDNIQEKIG FGSPHRATSNLSFEMHPQNGWSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51650			unknown protein		Lus10025247 [exp]	0	1
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	2.6	0.8694
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	13.3	0.8518
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10020108 [exp]	14.8	0.8296
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10010998 [exp]	14.8	0.7563
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	16.4	0.8066
AT3G55550			Concanavalin A-like lectin pro...		Lus10040276 [exp]	16.4	0.7926
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10026770 [exp]	16.6	0.7596
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	16.7	0.8216
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	17.0	0.8310
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	17.3	0.8286

Compare expression of checked genes

Lus10025247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.