Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51730 211 / 5e-69 saposin B domain-containing protein (.1) AT5G01800 163 / 6e-50 saposin B domain-containing protein (.1) AT1G34460 45 / 4e-05 CYCB1;5, CYC3, CYCB1;4 CYCLIN 3, CYCLIN B1;5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009099 [exp] 422 / 8e-144 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10014162 [exp] 234 / 3e-76 AT5G01800 176 / 4e-54 saposin B domain-containing protein (.1) Lus10022750 [exp] 232 / 8e-76 AT5G01800 184 / 2e-57 saposin B domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107300 [exp] 230 / 5e-76 AT3G51730 182 / 9e-58 saposin B domain-containing protein (.1) Potri.016G133400 [exp] 226 / 3e-74 AT3G51730 178 / 5e-56 saposin B domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Lus10025248 pacid=23157366 polypeptide=Lus10025248 locus=Lus10025248.g ID=Lus10025248.BGIv1.0 annot-version=v1.0 ATGGATATGAGAGTTGGGCTCTTTCTTCTCCTTGTGTTATTTGGTTGTGCCTTCGGTTCTTCTTCCGCCAGACAAATCTCAACTTTTGAGCTTCCCATCG TTGGGGCGTATGAAACATCAGATGTTACAGTGCAGATCGTTCAAGCTGAGGAAGTAGCAAAGAACGACGAATTATGCACGTTGTGCGAACAGTACAGTGG TCAGGCGCTCGAGTATCTTGCTAATAACAAGACTCAGACTGAGATCATAGAAATCCTTCATAATAGCTGTTCCCAAGTTGCCTCTTTCAAGAGAGAGTGC ATTAGTTTGGTAGACTATTATGCACCTCTCTTCTTCTTAGAGGTTTCATCTATTCGCCCCGAAGAGTTCTGTCGCAAGATGAACCTTTGCCAGAAGGTCG TGGCCATTGCCTCGCAACTTAAAGAAGACACATGTGGAATCTGCCACCAAACCATTGACGAAGTTATGTCCAAGTTGAAAGATCCCGACACTCAGCAATG TGCCTTGAGTGTAATACTGTGGACGTATTATTGCCAACAGCTGGAGATAATCGAGTTGCTTTTGAAAGCCTGCAACAAAATTGAGAGTCGCAAGGCACAG TGCAAGAAGCTGGTGTTTGAGTACGGTCCAGTGATCCTTATCAACGCAGAACAATTTCTGGAGAAAACGGACATATGCACCCTGTTACGTGCTTGCACAA GCACTGAACAAACATCAGCAGCGGAAATCGGTGTGGCTGAATCGTGA
AA sequence Show only first row Show all	>Lus10025248 pacid=23157366 polypeptide=Lus10025248 locus=Lus10025248.g ID=Lus10025248.BGIv1.0 annot-version=v1.0 MDMRVGLFLLLVLFGCAFGSSSARQISTFELPIVGAYETSDVTVQIVQAEEVAKNDELCTLCEQYSGQALEYLANNKTQTEIIEILHNSCSQVASFKREC ISLVDYYAPLFFLEVSSIRPEEFCRKMNLCQKVVAIASQLKEDTCGICHQTIDEVMSKLKDPDTQQCALSVILWTYYCQQLEIIELLLKACNKIESRKAQ CKKLVFEYGPVILINAEQFLEKTDICTLLRACTSTEQTSAAEIGVAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	0	1
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	1.0	0.9746
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	3.2	0.9699
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	4.0	0.9681
AT5G49710			unknown protein		Lus10000765 [exp]	4.2	0.9686
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	5.2	0.9621
AT1G58030		CAT2	cationic amino acid transporte...		Lus10001334 [exp]	5.5	0.9662
AT1G58030		CAT2	cationic amino acid transporte...		Lus10013638 [exp]	5.7	0.9595
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10015168 [exp]	6.0	0.9544
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	6.0	0.9662
AT3G52220			unknown protein		Lus10038762 [exp]	7.9	0.9538

Compare expression of checked genes

Lus10025248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.