Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38370 280 / 2e-87 Plant protein of unknown function (DUF827) (.1) AT2G40480 161 / 7e-43 Plant protein of unknown function (DUF827) (.1) AT3G51720 152 / 2e-40 Plant protein of unknown function (DUF827) (.1) AT3G56270 98 / 1e-21 Plant protein of unknown function (DUF827) (.1) AT2G26570 91 / 1e-18 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT5G42880 66 / 5e-11 Plant protein of unknown function (DUF827) (.1) AT4G33390 63 / 3e-10 Plant protein of unknown function (DUF827) (.1) AT1G45545 60 / 3e-09 Plant protein of unknown function (DUF827) (.1) AT1G75720 41 / 0.0008 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009099 [exp] 932 / 0 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10034211 [exp] 146 / 2e-37 AT2G40480 385 / 1e-128 Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 85 / 8e-17 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 84 / 1e-16 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10029056 [exp] 73 / 3e-15 AT2G40480 124 / 1e-34 Plant protein of unknown function (DUF827) (.1) Lus10029055 [exp] 61 / 2e-09 AT2G40480 226 / 6e-69 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133300 [exp] 554 / 0 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1) Potri.019G049201 [exp] 220 / 7e-64 AT2G40480 358 / 3e-117 Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 86 / 3e-17 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 81 / 1e-15 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 44 / 0.0002 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10025249 pacid=23157440 polypeptide=Lus10025249 locus=Lus10025249.g ID=Lus10025249.BGIv1.0 annot-version=v1.0 ATGGGCTCCGAGATCGGTGTCGGTGAATCTCCTCCTCCTTCTGCTTGGATCAACAGAGAAGAAGAGACTTCCAGAATCGAAGTCGACACCTCCGCGCCTT TCGAGTCCGTTAAGGAGGCCGTCACTCGATTCGGCGGTCTCGGCTACTGGAAACCTTCCAAGCTTTCCGCCTCCGAGAATGAAATGGTGGAAGATGGGGT GGAGGACATGACCAAAGTAGAGGAGCAAGCAGAGGAGCTGGAAAAAGATCTGATCCTGAAAGAAAGGGAGACACTTGATGTCTTGAAACAATTGGAAGCC ACCAAAACGATTGTTGAAGAGCTCAAACTGAAGCTGCAGAAGCAAGCTTCTGAAGTTAATGTCACACTTGCTACATCAGATGAAAAAGTATTACTTCTTG GAGATGTGGCTGAAAACAAAGACGATCATCTTGAGGGAGAAGGAGAGGAGGATGTTAATGTGAATCCTGTACTGGGAATCGAAAATTTCCCACCTTCCTC CTCACCTGGTCTCATTCTGTTGGAACTTAGACAAGCAAAGTTCAACTTGACGAGGACTACCGGTGATCTTGCTGACATCCGATCTTCTGTTGAATTGCTG AACAAGAAGCTGGAGAAGGAAAGGGCTTCGCTTGAGAGGACACGCGAGAGGCTTACAACAAACTCGTCCAAGATGTCTTGCCTTGAGAAAGAGCTTAGCA AGACACAGTTGAAGCTTCAGGCTGCGAAAGGTGCTGAAATCAATTATGGTTCGGAGGAGAACAATGATGATCCATTGGATATAACCAAGGAGTTACAGCG GTTGAGTTCTGAGGTGGAGCAGTTCAAGGTAATGGGAGATGCAGCAAGGAACGAAGTTTCTAGAGCCTTGTCTGAGATCGAACAGACGAGAACTAGGATA AAAACGGCCGAGATGAGGTTGGTTGCTGCTCGGAAGATGAAACAAGCAGCTAGAGCAGCAGAAGCTGTTGCTCTTGCCGAGATCAAGGCTTTATCCAAGT CAAAAGAGGAGAGTTATTCTTTCTCGCCAGAGGGTGTAACCCTTACATATGAAGAGTACTCATCCCTAACCTGTAAAGCTCATGAAGCCGAGCAAGTTTC GAAGACAAAGGTTGTGAACGCCATGGTACAAGTTGAGGAAGCAAACGTTTCAGACATGGAAGTGTTGAAGAAAGTGGAGGAAGCTACCGAGGAAGTGAAA ACCAGTAAGGCTGCCTTGGAAGAAGCGTTGAGCAGAGTGGAGGCTGCAAACAAGGAGAAACTAGCAGTTGAAGAGGCTTTAAGGAAGTGGAGATCGGAGA ATGGTCAGAAGAAACAACGCCATGTCCATAACTCCACCAAGTTCAAGAACTCAACCCATTCCTCCACCCACCACAACCGGAGGGAGCTATCTCGTCTTCA CGATGTGAATGGCACGAACCTGGCAACCGATGATGATGGAAAGGATCCTACTTTGAAGCCGACATTGTCAATAGGGCAAATTCTAAGCGGGAAGTTGTTC CTGCCTGAAGATTTTGAGATGGAGATGATTGCGGAGAAAGGCGGGATGAAAAGAAAAGTATCATTGGGTCAAATGCTGAGCAAAAAGAATGTTGGTGGTG AGATACAAGTGCCACCACTCCAAGGAAGGAAGGGTGAGAGTGAAGGCTCGTCGTCGTCTTCCTCATTCACACATGTATCAGGAAAGAGGAAGAAATTTGG GTTTGCTCGGTTCTCATTGATGTTGGCAAAGCAAAGTAAGAAGAAGAAGAAGCCTAATCTGAATCTTAGGTAA
AA sequence Show only first row Show all	>Lus10025249 pacid=23157440 polypeptide=Lus10025249 locus=Lus10025249.g ID=Lus10025249.BGIv1.0 annot-version=v1.0 MGSEIGVGESPPPSAWINREEETSRIEVDTSAPFESVKEAVTRFGGLGYWKPSKLSASENEMVEDGVEDMTKVEEQAEELEKDLILKERETLDVLKQLEA TKTIVEELKLKLQKQASEVNVTLATSDEKVLLLGDVAENKDDHLEGEGEEDVNVNPVLGIENFPPSSSPGLILLELRQAKFNLTRTTGDLADIRSSVELL NKKLEKERASLERTRERLTTNSSKMSCLEKELSKTQLKLQAAKGAEINYGSEENNDDPLDITKELQRLSSEVEQFKVMGDAARNEVSRALSEIEQTRTRI KTAEMRLVAARKMKQAARAAEAVALAEIKALSKSKEESYSFSPEGVTLTYEEYSSLTCKAHEAEQVSKTKVVNAMVQVEEANVSDMEVLKKVEEATEEVK TSKAALEEALSRVEAANKEKLAVEEALRKWRSENGQKKQRHVHNSTKFKNSTHSSTHHNRRELSRLHDVNGTNLATDDDGKDPTLKPTLSIGQILSGKLF LPEDFEMEMIAEKGGMKRKVSLGQMLSKKNVGGEIQVPPLQGRKGESEGSSSSSSFTHVSGKRKKFGFARFSLMLAKQSKKKKKPNLNLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	0	1
AT2G25270			unknown protein		Lus10001945 [exp]	1.4	0.9511
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	1.7	0.9354
AT1G11120			unknown protein		Lus10018564 [exp]	2.4	0.9295
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	3.2	0.9454
AT2G39870			unknown protein		Lus10004675 [exp]	4.0	0.9210
AT2G39870			unknown protein		Lus10040247 [exp]	4.5	0.9310
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	6.0	0.9313
AT3G48970			Heavy metal transport/detoxifi...		Lus10027470 [exp]	7.5	0.9052
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	8.1	0.9184
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10040579 [exp]	8.7	0.9107

Compare expression of checked genes

Lus10025249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.