Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51640 566 / 0 unknown protein AT3G51650 563 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025247 [exp] 1239 / 0 AT3G51650 723 / 0.0 unknown protein Lus10009100 [exp] 1179 / 0 AT3G51650 721 / 0.0 unknown protein Lus10009097 [exp] 864 / 0 AT3G51650 360 / 2e-114 unknown protein Lus10009098 [exp] 347 / 3e-115 AT3G51650 294 / 3e-95 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107500 [exp] 857 / 0 AT3G51650 671 / 0.0 unknown protein Potri.016G133700 [exp] 835 / 0 AT3G51650 706 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025250 pacid=23157433 polypeptide=Lus10025250 locus=Lus10025250.g ID=Lus10025250.BGIv1.0 annot-version=v1.0 ATGTTGCCTTGGTTAGTGATTCCTCTTATAGGATTGTGGGCTTTGTCTCAACTCCTTCCCCCTGCTTTCCGGTTCGAGATAACCTCCCCAAGACTTGCTT GTGTGTTTGTGCTTTTGATTACTCTCTTCTGGTACGAGATTTTGATGCCTCAGTTGTCTGCTTGGCGTGTGAGGAGGAATGCCCAGTTAAGGGAGCGGAA GAGGTTTGAAGCTATTGAACTGCAGAAGCTCCGAAAAACTGCTACTAAAAGGTGTAGAAATTGCTTGACTCCTTATAAGGATCAGAATCCGGGAGGTGGC AAGTTTATGTGTGCTTACTGTGGTCATATATCCAAGAGGCCAGTATTGGAAGTGGCTGTACCTCCTGGATTAGGGATTCCAAACTCTGGGATTGTTAAGG ACTTGGTTGGAAAGGGTGGAAAAATACTAAATGGCAAGGCATCATCTGATAATGGATGGGTTTGCAGTCAGGATTGGTTAGAGAATGGTGGTTGGGTTGG GGGGTCTGTTGCTGGGAAGTCTAGTTATTGGCAGAGAAGTGGAGGTGGTGGCCGTGGTATATTTGTAGCAGATGATGACTGTTTGGCAGAGAACTCTTAC TTGCGCTTTGTAATTTTTGGGTGCAAACTACTGACTTCATTTTTCTTGAGCATTAGATGGCTTCTGAGAAAGATTTTTAGGATTAGTTCGTCAAAGGACA ATGCTTCTTCCAATGCAGACCATAGGGGAGTCATGGCTAAAAGAGGAGAGAATGGGATGAACCTTTCTGAGAGTAGAGTGGAGAAAGCTCGCAGGAAAGC CGAGGAGAAGAGGCAGGCTAGGTTAGAGAGGGAGCTTTTGGAGGAGGAAGAGAAGAAACAGCGGGAAGAGGTTGCTAGGTTAGTCGAGGAGCGCCGAAGG TTGAGGGATGAGAAAATGGAGGCTGAGAAAGACCGGAACAAGCTGTCACTACCAACTAGCAAAGATCATATAAGGGATGCAGAAAAAAAGCGCCAGGAGA GAAGAAGAGATAAAGATAAGGGATCCAGTAAGAGTAACTCTGATGTGGAAGAGATGGAAAAACGTGCTGGTAAAGAAAATGCAAGGAAAAAAGATTTTGA CAAGAAGAGTGATGTTGAGAGAAAGGAACCACAAAAGTCTGTTACATCTATACACAATTTTAGCCGTGGAAATGCTGGAACCAGGTACATTGACAGGATG AAGGGAACATTTTTATCTCCTTCAAGAGCTTTTAGTGGAAACGGTTTCTTTGGACGGAATGTTAACAATCCTGCTCCTGCTACGAAAGAAAGGAGAGAGA TATATCCACCTGGTCTGGCTGGGAAACCAAGTACCAATTCCGATGATAAAAATGCTAACCAGCCTGTACCATCAGAACAGCAGAGGGCAGGACCTAAGAA GTCATGGCAGCAATTATTTACACCTTCGTCATCCTCAAATACCAATGTCATCGGCCGACCGAATCCAAAACCTCAGGCAGACTTGCAGAAGCCTCAGTTC CCAGGACAAACATCAACGATTCATTCATTCGATAATCCTATTCATTTTGGGTTGCCATCACCATTTTCTACCCCCATGTATCCCGATGGGTCCAGCAGAT CTAGTTTAGGTTTCTCACCTCCCATTGAGTCCAGTGCCCATCGGATTTCTGAAGAACCAGAGTGTTTTGAAGACCCTTGTTACGTTCCTGATCCCATATC ATTGCTTGGGCCTGTCTCGGAGTCCCTGGATAATTTCCAGTTGGACTTGGGTGCTGGTTTTGCATCAGATAGACCTCTAAAGAAGTCGGCTGGATCTCCT GAAGTGAGCAAGCCATCTCCAATCGAGTCCCCATTATCTCGTCGAATTTCTGATGACAAGCACAATAACTGGTTCCCCACCACTCCTAAGTCTCGAGATG TGAATGGCCATTATGTGGATGACGTTCATAAAAGTGAGATGGGTACATGGCAAATGTGGAAGAGTACTCCTCTTTGTCAAGATGGTCTTGGTTTGGTTGG AGGCTCGGGGAGCTGGCTTTTGCCACCACAGAGGAGTATTTTGACCGAAGAAGATTTTTTTTCGCGTCCTTCCTCTCAGAAGAATACTTCATTGTTTTCG ACCGATGACAAAGCTCTTTCAGGAAATCTCTCTTCTCAGAACGGCTATCTTGGTAATGGCCACAATGGGGTGTTCAGTCCTGTCACTAGCTCGCGTGACA ATGAACCATGGTTGCAGAATGCTTTTTACCGTCCACTTTCTGACAACGAAGGTCATCTCTTTGTCAAAACTGAGGAAGATAATATTCGAGAAAAGATTGG TTTTGGCAGTCCGCATAGAGAAGCTTCCAATCTTTCATTTGAGATGCATCCTCAAAATGGTTGGTCCAAGAAGGAGTGGAATGTGCAAGGAAGGGCAGAG GATGTTGCGAAGTCCTCAGTGAACCATCCAAGTAGTATTGAGGACTTATTTTCCGCCAAACCCTAA
AA sequence Show only first row Show all	>Lus10025250 pacid=23157433 polypeptide=Lus10025250 locus=Lus10025250.g ID=Lus10025250.BGIv1.0 annot-version=v1.0 MLPWLVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLITLFWYEILMPQLSAWRVRRNAQLRERKRFEAIELQKLRKTATKRCRNCLTPYKDQNPGGG KFMCAYCGHISKRPVLEVAVPPGLGIPNSGIVKDLVGKGGKILNGKASSDNGWVCSQDWLENGGWVGGSVAGKSSYWQRSGGGGRGIFVADDDCLAENSY LRFVIFGCKLLTSFFLSIRWLLRKIFRISSSKDNASSNADHRGVMAKRGENGMNLSESRVEKARRKAEEKRQARLERELLEEEEKKQREEVARLVEERRR LRDEKMEAEKDRNKLSLPTSKDHIRDAEKKRQERRRDKDKGSSKSNSDVEEMEKRAGKENARKKDFDKKSDVERKEPQKSVTSIHNFSRGNAGTRYIDRM KGTFLSPSRAFSGNGFFGRNVNNPAPATKERREIYPPGLAGKPSTNSDDKNANQPVPSEQQRAGPKKSWQQLFTPSSSSNTNVIGRPNPKPQADLQKPQF PGQTSTIHSFDNPIHFGLPSPFSTPMYPDGSSRSSLGFSPPIESSAHRISEEPECFEDPCYVPDPISLLGPVSESLDNFQLDLGAGFASDRPLKKSAGSP EVSKPSPIESPLSRRISDDKHNNWFPTTPKSRDVNGHYVDDVHKSEMGTWQMWKSTPLCQDGLGLVGGSGSWLLPPQRSILTEEDFFSRPSSQKNTSLFS TDDKALSGNLSSQNGYLGNGHNGVFSPVTSSRDNEPWLQNAFYRPLSDNEGHLFVKTEEDNIREKIGFGSPHREASNLSFEMHPQNGWSKKEWNVQGRAE DVAKSSVNHPSSIEDLFSAKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51650			unknown protein		Lus10025250 [exp]	0	1
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10014591 [exp]	4.1	0.8920
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	9.2	0.8875
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	18.7	0.8651
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	20.7	0.8668
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	22.2	0.8743
AT5G41020	MYB		myb family transcription facto...		Lus10041714 [exp]	23.9	0.8290
AT5G09570			Cox19-like CHCH family protein...		Lus10007086 [exp]	24.5	0.8294
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	25.8	0.8305
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	28.8	0.8693
AT4G10790			UBX domain-containing protein ...		Lus10003214 [exp]	30.0	0.8590

Compare expression of checked genes

Lus10025250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.