Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06930 44 / 1e-05 unknown protein AT2G40475 43 / 4e-05 ASG8 ALTERED SEED GERMINATION 8, unknown protein AT5G01790 39 / 0.001 unknown protein AT4G25845 38 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009096 [exp] 270 / 2e-92 AT1G06930 47 / 2e-06 unknown protein Lus10034209 [exp] 67 / 5e-14 AT1G06930 52 / 8e-09 unknown protein Lus10029060 [exp] 67 / 1e-13 AT5G01790 46 / 2e-06 unknown protein Lus10012896 [exp] 66 / 5e-13 AT2G40475 52 / 6e-08 ALTERED SEED GERMINATION 8, unknown protein Lus10030550 [exp] 60 / 1e-10 AT5G01790 50 / 2e-07 unknown protein Lus10014158 [exp] 47 / 4e-06 AT1G06930 45 / 8e-06 unknown protein Lus10019869 [exp] 42 / 0.0002 AT4G25850 48 / 4e-07 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Lus10009929 [exp] 40 / 0.0005 AT1G06930 61 / 1e-11 unknown protein Lus10022751 [exp] 39 / 0.001 ND 42 / 5e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133200 [exp] 67 / 1e-13 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.006G107200 [exp] 64 / 9e-13 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 51 / 5e-08 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.019G127400 [exp] 44 / 2e-05 AT1G06930 / unknown protein Potri.013G156100 [exp] 44 / 2e-05 AT1G06930 / unknown protein Potri.018G091900 [exp] 43 / 4e-05 AT4G25845 54 / 2e-09 unknown protein Potri.006G167300 [exp] 43 / 4e-05 AT4G25845 78 / 2e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025251 pacid=23157377 polypeptide=Lus10025251 locus=Lus10025251.g ID=Lus10025251.BGIv1.0 annot-version=v1.0 ATGTTCGGTGGTCGCCGGAGGAGCAAGGCTAACAGTCCAGGCGACCTCATAATCCCCCCGGAGAAGACGATGACCGGATTAGAAGACAGCAACAACAACA ACAATGGCAAGTTGTACTCAAGGCTGCTGTCAAGGGAAAACAATTACCCTTCAGTCAGAGTATACTACGGAGAAGTCTCTGTAGCAGTTCCCTTCACTTG GGAATCCCAGCCCGGTACTCCCAAATACCGCCACTTCTCACACTCCTCCGACGATCTCATCCCTCCCCTCACCCCTCCTCCTTCCTACTTCTCCAACTCC TCCTCCACTACGACTCCTCTTCATCACACCATCTCTTCTACTTCTTCTTCATCTCGTCACCTCAGCAAGAACACCAAGAAGAACACCTACTCCCTCCCTA ACTTCATCAGCTTCCTCTCCAGATCATCATCCCCCAACAAACCCCTCACCACCGCCACCTCATCAGACTCCTCCTTCACTTCTTCCTCTTCTACTTCTTC AGTGTACCGCCGGCGAAAGACGGACTCCTTGCTGGATCATGAACCCTCCTCTGGATCTGGATCGCCTACTTCGATACTCTGCTTTGGAGGGAGCAACTGG CGTCGTGGCCGCTACGGCTGCTTGTAA
AA sequence Show only first row Show all	>Lus10025251 pacid=23157377 polypeptide=Lus10025251 locus=Lus10025251.g ID=Lus10025251.BGIv1.0 annot-version=v1.0 MFGGRRRSKANSPGDLIIPPEKTMTGLEDSNNNNNGKLYSRLLSRENNYPSVRVYYGEVSVAVPFTWESQPGTPKYRHFSHSSDDLIPPLTPPPSYFSNS SSTTTPLHHTISSTSSSSRHLSKNTKKNTYSLPNFISFLSRSSSPNKPLTTATSSDSSFTSSSSTSSVYRRRKTDSLLDHEPSSGSGSPTSILCFGGSNW RRGRYGCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06930			unknown protein		Lus10025251 [exp]	0	1
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	1.0	0.8801
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10028880 [exp]	2.4	0.8658
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	6.9	0.8530
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10005572 [exp]	8.1	0.8326
AT1G75800			Pathogenesis-related thaumatin...		Lus10034534 [exp]	29.3	0.8301
AT1G06980			unknown protein		Lus10026407 [exp]	29.5	0.8412
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026113 [exp]	31.3	0.7723
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	36.5	0.8388
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	41.5	0.8028
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	43.7	0.8371

Compare expression of checked genes

Lus10025251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.