Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30970 556 / 0 ASP1 aspartate aminotransferase 1 (.1.2) AT5G19550 357 / 1e-120 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT5G11520 338 / 7e-113 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT4G31990 337 / 2e-112 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT1G62800 334 / 8e-112 ASP4 aspartate aminotransferase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020720 [exp] 546 / 0 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10029796 [exp] 546 / 0 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10000181 [exp] 534 / 0 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2) Lus10043222 [exp] 358 / 5e-121 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 355 / 7e-120 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10022137 [exp] 352 / 6e-118 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10001938 [exp] 343 / 2e-114 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10001753 [exp] 251 / 4e-79 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107100 [exp] 622 / 0 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.014G143300 [exp] 555 / 0 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.018G082500 [exp] 345 / 2e-116 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241600 [exp] 345 / 2e-115 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.018G022200 [exp] 341 / 1e-113 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.006G260200 [exp] 336 / 1e-111 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.006G241500 [exp] 317 / 5e-105 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10025252 pacid=23157311 polypeptide=Lus10025252 locus=Lus10025252.g ID=Lus10025252.BGIv1.0 annot-version=v1.0 ATGTGGAGGCATCTTTTGACAAAAACTTCATTGAAATGCTTCTCAACCTCAGCTAGAGCTTCGCGGTGGTTGGATCATATTGGTCCGGTTTCAAAGGACC CCGTTACCGCTGTCTCCGAGGCTTTCGTTGCCGACCCTTCCCCCAACAAGATCAATCTCGCCGTGGGAGCTTACAGGGATGATCAGGGGAAGCCTGTTGT CCTACAGTGTGTTCGAGAAGCTGAAGACAAGATTAGTGATTTCGATTACATGGACTCTGTTTCCTGTGGGGGTTCAAATGTAGTGCAAGAGAGCGTGAAG CTAGTGTATGGGGAAAATTCGGATGTCGTTATAGAAAAAAGGTTTGCTGGAGTGCCGGCTCTGTCTGGAACTGGTGGATGCCGCCTCTTTGCTGAATTTC AGAGGCGTTTCTTTCCTGAATCTCCCATTTACTTGCCTGATCCAACTTGGTCCAACCACCATAACATATGGACCAATGCGCATGTTCCAACGAAGATGTT CCGTTACTACCATCCACATATGAAGGATTTGGACTTCACCGCTCTTATGGATGATGTCAAGAATGCCCCAGATGGTTCGTTCTTCCTGCTCCACCCTTGT GCTCACAACCCAACTGGAGTTGACCCTACTGAGGAACAATGGAGAGAAATTTCAAACCTGTTCAAGGTGAAAAATCATTTCCCGTTCTTCGACATGGCTT ATCAAGGTCTAGTAAGCGGAGACATGGACAGAGATGCCTTGTCAATCCGAATTTTCCTCCAGGATGGACATTTAATTGGCTGCTCTCAGTCCTTCACAAA GACCATGGGATTGTTTGGGCATCGCGTTGGATGTCTTAGCATTCTCTGTACTGATTCAGAGAAGGCTCGTCAAGTGAAAACCCAACTGCAGCAGATTGCC GGATCAATGTATGGCAGTGCTCCAAAGCATGGTGTACTATTGCTCTCAACGATCTTGAACAACCCGGAATTGAAGTCACTCTGGATCAAAGAAGTGAAGT CAATGGCAAATCACATACAAATCACGCGATCTACGTTGCGGGAGAGGCTCGAGTTGACTGGTTCTTCTCTCAATTGGGAACACATCACAAAGCAGGTAGG CATGTTCTCGCTCTCCGGTCTAACCAGAGAGCAAGTTGATCGGCTAGCAGAAGACTTCCACGTGTACATAACCCCGAATGGACGTATGAGCATGACGGGC ATCACAGCGAGCAATGTGAGCTACATAGCAAATGCAGTCCGTGAAGTCACTAAATGTTGTTAA
AA sequence Show only first row Show all	>Lus10025252 pacid=23157311 polypeptide=Lus10025252 locus=Lus10025252.g ID=Lus10025252.BGIv1.0 annot-version=v1.0 MWRHLLTKTSLKCFSTSARASRWLDHIGPVSKDPVTAVSEAFVADPSPNKINLAVGAYRDDQGKPVVLQCVREAEDKISDFDYMDSVSCGGSNVVQESVK LVYGENSDVVIEKRFAGVPALSGTGGCRLFAEFQRRFFPESPIYLPDPTWSNHHNIWTNAHVPTKMFRYYHPHMKDLDFTALMDDVKNAPDGSFFLLHPC AHNPTGVDPTEEQWREISNLFKVKNHFPFFDMAYQGLVSGDMDRDALSIRIFLQDGHLIGCSQSFTKTMGLFGHRVGCLSILCTDSEKARQVKTQLQQIA GSMYGSAPKHGVLLLSTILNNPELKSLWIKEVKSMANHIQITRSTLRERLELTGSSLNWEHITKQVGMFSLSGLTREQVDRLAEDFHVYITPNGRMSMTG ITASNVSYIANAVREVTKCC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	0	1
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	2.8	0.8897
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	2.8	0.9222
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	3.5	0.9188
AT4G17260			Lactate/malate dehydrogenase f...		Lus10004350 [exp]	5.8	0.9215
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	6.0	0.8667
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	6.7	0.9061
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	7.7	0.8764
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032682 [exp]	9.5	0.8447
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	11.3	0.9122
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	11.8	0.8663

Compare expression of checked genes

Lus10025252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.