Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 170 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT2G14560 142 / 1e-42 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 139 / 6e-41 Protein of unknown function (DUF567) (.1) AT3G11740 135 / 5e-40 Protein of unknown function (DUF567) (.1) AT3G16900 114 / 1e-31 Protein of unknown function (DUF567) (.1) AT3G56180 82 / 4e-19 Protein of unknown function (DUF567) (.1) AT3G10986 79 / 4e-18 Protein of unknown function (DUF567) (.1) AT3G15810 64 / 2e-12 Protein of unknown function (DUF567) (.1) AT1G80120 54 / 5e-09 Protein of unknown function (DUF567) (.1) AT2G30270 50 / 2e-07 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009092 [exp] 296 / 6e-103 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 293 / 1e-101 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 290 / 2e-100 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 290 / 2e-100 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 278 / 6e-96 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 275 / 1e-94 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009093 [exp] 250 / 3e-85 AT5G01750 147 / 1e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 222 / 1e-73 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 209 / 1e-68 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G130500 [exp] 227 / 9e-76 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131850 [exp] 225 / 5e-75 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 224 / 1e-74 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 200 / 4e-65 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 194 / 8e-63 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 192 / 9e-62 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 191 / 2e-61 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 189 / 8e-61 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 184 / 1e-58 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 182 / 3e-58 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10025253 pacid=23157374 polypeptide=Lus10025253 locus=Lus10025253.g ID=Lus10025253.BGIv1.0 annot-version=v1.0 ATGGCCGCCGGTCAACCCCCCAACCCGATTCCGGCGATGTCTGTGTATTCCCCCCTCGAGCATCCTGTGGTTGTGATCAGCCCGTATTTCCTGGCCCAAT ATCCAGTAGACCTAACCGTCGTCGCAGCAAATGATTCCACCGTCATGGACTTCAACGGGGCCGTCATTTTCCGGACCAAGAATAAACGCCGGAGCCTTCA CCATCGCAGAAAGTTGATGGATGCCTCCGGTAACGTGCTTGTCTCCATGTCACAGAAGCTAATGACGGCACACAGAAGATGGCAATTGTTTCGTGGAGAT AGCCAAGATGGTAAGGATTTGATGTTTAGTGTAAAGGAGTCCTCCATGTTGCAGCTCGAGACTAAATTAGACGTTTTCTTGGCTGGAAATGCCGATGAAC AAGTTCCTGATTTCAAGATCAAGGGTGCCTACCATGAGAGTTCCTGCATCGTCTATCTTGGCAACACCAACCATATCATTGCTCGAATGTTCAGAGATCG TAGCACAAAAACCAAAAGTTTTAGGGTGATAATTTACCCAAATGTTGATTACGCCTTCGTTATCTCTCTTGCTGTGGTGACTATTAATGAGTTGAACAAA TACCGGAAAGCAGAAGAGTTTGGCCAGATTGCGGGTGGGCTTTAG
AA sequence Show only first row Show all	>Lus10025253 pacid=23157374 polypeptide=Lus10025253 locus=Lus10025253.g ID=Lus10025253.BGIv1.0 annot-version=v1.0 MAAGQPPNPIPAMSVYSPLEHPVVVISPYFLAQYPVDLTVVAANDSTVMDFNGAVIFRTKNKRRSLHHRRKLMDASGNVLVSMSQKLMTAHRRWQLFRGD SQDGKDLMFSVKESSMLQLETKLDVFLAGNADEQVPDFKIKGAYHESSCIVYLGNTNHIIARMFRDRSTKTKSFRVIIYPNVDYAFVISLAVVTINELNK YRKAEEFGQIAGGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	3.0	0.9823
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	4.5	0.9819
					Lus10015339 [exp]	4.6	0.9816
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	7.4	0.9806
AT4G35030			Protein kinase superfamily pro...		Lus10017273 [exp]	7.7	0.9708
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	10.6	0.9772
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10041644 [exp]	11.0	0.9637
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	12.2	0.9748
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	12.7	0.9726
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	12.7	0.9798

Compare expression of checked genes

Lus10025253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.