Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 284 / 1e-94 Peroxidase superfamily protein (.1) AT5G58390 271 / 1e-89 Peroxidase superfamily protein (.1) AT1G14550 256 / 1e-83 Peroxidase superfamily protein (.1) AT4G36430 255 / 2e-83 Peroxidase superfamily protein (.1) AT5G58400 254 / 6e-83 Peroxidase superfamily protein (.1) AT1G14540 253 / 2e-82 Peroxidase superfamily protein (.1) AT5G66390 251 / 1e-81 Peroxidase superfamily protein (.1) AT2G18150 251 / 2e-81 Peroxidase superfamily protein (.1) AT1G44970 246 / 1e-79 Peroxidase superfamily protein (.1) AT2G18140 246 / 1e-79 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006534 [exp] 303 / 2e-102 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10009935 [exp] 295 / 4e-99 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10009936 [exp] 290 / 3e-97 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10000346 [exp] 289 / 2e-95 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10034207 [exp] 284 / 1e-94 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10008581 [exp] 278 / 2e-92 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10030145 [exp] 278 / 3e-92 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10009898 [exp] 274 / 6e-91 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10009902 [exp] 270 / 4e-89 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132800 [exp] 379 / 4e-132 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 373 / 6e-130 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 366 / 3e-127 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 302 / 8e-102 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156800 [exp] 301 / 2e-101 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 300 / 6e-101 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 295 / 6e-99 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 283 / 2e-94 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 281 / 1e-93 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 277 / 4e-92 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10025255 pacid=23157441 polypeptide=Lus10025255 locus=Lus10025255.g ID=Lus10025255.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCACGTAGCATGCAGCAGATTACCATGATGATGATCTTCGCCACGTCACTTGTTCTGGCCTTCAATGTTGCTTCCTCGTCAGCTTCAC TGTCTCCATACTACTACCACAAAGTATGCCCAAAAGCATTGCCAACTATCCGCCGGGTCGTCGAGGCCGCTGTTCAACGCGAGCGTCGTATGGGCGCGTC TCTGTTGCGTCTCCATTTCCACGACTGCTTCGTCCAAGGGTGTGATGGGTCGATTCTTTTGGATGCGACGCCGACAATCGACAGCGAGAAGACTGCTCTC CCTAACAACAACTCCGCTCGAGGGTTTGAGGTTATCGACCAGATCAAGGCCGCAGTTGACAAGGCCTGCGGCAGGCCTGTCGTCTCCTGCGCTGATATCT TGGCTGTTGCTGCTCGTGACTCTGTTGTTGCGCTGGGAGGCCCAAGCTGGGAAGTAGAGCTGGGACGAAGGGACTCAACAACTGCTAGTAGAACAACAGC AAACAACGACATCCCATCACCATTCATGGACCTTCCCGCACTCCGAAGCTCCTTCAAAAAGCAAGGCCTCAACGAAAGGGACCTCGTAGCACTCTCCGGG GGCCACACAATCGGGTTCGCTCAGTGCCAGTTCTTCAGGAACCGGATCTTCAACGAGACATCCGCAAGCAGTATCAACCCTAAGTTCGCCAGAGAGCGCC GATCAAACTGTTTCGCCAACTCCGGAGACACCAACCTCGCTTCCTTGGACAGCTCAGCAGCCAGCTTCGACATTTCGTACTTCAAGAACTTGGTCGCCAA GAAAGGGTTGCTTCACTCCGACCAAGCCCTCCTCGCTGGCGGGTCCACTAACTCGCTGGTCAGCACTTACAGCTCGAACGGAAGGAGTTTCTGGTACGAT TTCGCCAACTCGATGGTTAAGATGGGGAACATTAAACCGTTGACTGGGAACCGTGGTCAGATTCGAGTCAACTGCAGGATGGTCAACTAA
AA sequence Show only first row Show all	>Lus10025255 pacid=23157441 polypeptide=Lus10025255 locus=Lus10025255.g ID=Lus10025255.BGIv1.0 annot-version=v1.0 MASSSRSMQQITMMMIFATSLVLAFNVASSSASLSPYYYHKVCPKALPTIRRVVEAAVQRERRMGASLLRLHFHDCFVQGCDGSILLDATPTIDSEKTAL PNNNSARGFEVIDQIKAAVDKACGRPVVSCADILAVAARDSVVALGGPSWEVELGRRDSTTASRTTANNDIPSPFMDLPALRSSFKKQGLNERDLVALSG GHTIGFAQCQFFRNRIFNETSASSINPKFARERRSNCFANSGDTNLASLDSSAASFDISYFKNLVAKKGLLHSDQALLAGGSTNSLVSTYSSNGRSFWYD FANSMVKMGNIKPLTGNRGQIRVNCRMVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	2.0	0.9631
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	2.8	0.9551
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10030330 [exp]	3.3	0.9366
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	4.0	0.9437
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	4.0	0.9419
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	5.0	0.9435
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	6.2	0.9438
AT4G27290			S-locus lectin protein kinase ...		Lus10038553 [exp]	6.5	0.9420
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	8.5	0.9353
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	8.9	0.9373

Compare expression of checked genes

Lus10025255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.