Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 290 / 6e-97 Peroxidase superfamily protein (.1) AT5G58390 277 / 3e-92 Peroxidase superfamily protein (.1) AT5G06730 267 / 1e-87 Peroxidase superfamily protein (.1) AT5G06720 265 / 3e-87 ATPA2 peroxidase 2 (.1) AT5G58400 265 / 4e-87 Peroxidase superfamily protein (.1) AT1G14540 258 / 9e-85 Peroxidase superfamily protein (.1) AT1G14550 258 / 1e-84 Peroxidase superfamily protein (.1) AT2G18150 258 / 2e-84 Peroxidase superfamily protein (.1) AT5G19890 256 / 9e-84 Peroxidase superfamily protein (.1) AT4G16270 255 / 8e-83 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009090 [exp] 318 / 6e-110 AT5G05340 179 / 2e-55 Peroxidase superfamily protein (.1) Lus10025255 [exp] 307 / 1e-103 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10009937 [exp] 299 / 8e-101 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1) Lus10008581 [exp] 296 / 9e-100 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10006534 [exp] 297 / 1e-99 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10009936 [exp] 295 / 5e-99 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10034207 [exp] 291 / 1e-97 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10029065 [exp] 290 / 1e-96 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1) Lus10000346 [exp] 290 / 6e-96 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154400 [exp] 354 / 2e-122 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 320 / 4e-109 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 307 / 3e-103 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 305 / 7e-103 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 301 / 9e-102 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.013G156800 [exp] 298 / 3e-100 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 298 / 3e-100 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 295 / 6e-99 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 294 / 1e-98 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 293 / 2e-98 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10025256 pacid=23157356 polypeptide=Lus10025256 locus=Lus10025256.g ID=Lus10025256.BGIv1.0 annot-version=v1.0 ATGGCTCGTCCAAGTCTTATTAACCACAGTTTTGCCACACTACTTCTCTTGGCTAGTTTCCTTGCTGTAGGGACCTCGATCTCTTTGGTGCTCGACTTAT CTCTCAATTGCTACGATCAGACGTGCCCTCTCGCCACCTCCAAGATCAAAGAGATCGTCAACGAAGCAGTCCAGACCGAGAGGCGCATGGGGGCCTCTCT CCTTCGTCTTCACTTTCACGATTGCTTTGTCAATGGATGTGATGGATCGGTACTGCTAGACGACGTGGCACCAAGTTTCGTAGGAGAGAAGACTGCGCCG CCAAACGACAACTCCCTGAGAGGGTTCGATGTGATCGACAAGATCAAAGCGACGTTGGAAAGTATGTGTCCAGGAGTTGTGTCCTGTTCTGATATCTTGA CGGTGGCTGCCCGAGATGCCGTTGTGGCTCTTGGAGGACCAAGTTGGCAAGTTCTACTGGGACGAAAAGACTCCACCACCGCCAATTTCACCGGCGCACT CACAGACCTCCCTTCTCCGTTTCTAGATTTCACCAACCTCGCCGCCGCCTTTGCCCTCAAGGGCTTTACCTCTCAGGAAATGGTCACTCTCTCTGGAGCA CATACGGCAGGGAAAGCAAGGTGCGCGCTGTACCGGGACCGCGCTCACACCGAGTTGAACATCGATTCCGGCTATGCAACTTTCCTCCAGTCAGTCTGTC CGCTGTCTGGAGGCGACGATAACCTCGCCCCTCTCGACAACTCAACCACCAACGACGTGTTCGATGTGGGTTACTATCGGAGCTTGGCGAACCAAAAGGG ACTCCTCCACTCAGACCAGGCGCTCCTCCCCTCCGTTGCCAATACGCAGGTCAACACCTACAACACTATATTGGTTGGGTCGCTGACTTTCTTCTCGGAC TTCGCTAATGCGATGGTAAAGATGGGGAATCTTACCGGTCCAGCTGGCAACGTTGGTCAGATCAGAACCAACTGCAGGAGAGTCAACTAA
AA sequence Show only first row Show all	>Lus10025256 pacid=23157356 polypeptide=Lus10025256 locus=Lus10025256.g ID=Lus10025256.BGIv1.0 annot-version=v1.0 MARPSLINHSFATLLLLASFLAVGTSISLVLDLSLNCYDQTCPLATSKIKEIVNEAVQTERRMGASLLRLHFHDCFVNGCDGSVLLDDVAPSFVGEKTAP PNDNSLRGFDVIDKIKATLESMCPGVVSCSDILTVAARDAVVALGGPSWQVLLGRKDSTTANFTGALTDLPSPFLDFTNLAAAFALKGFTSQEMVTLSGA HTAGKARCALYRDRAHTELNIDSGYATFLQSVCPLSGGDDNLAPLDNSTTNDVFDVGYYRSLANQKGLLHSDQALLPSVANTQVNTYNTILVGSLTFFSD FANAMVKMGNLTGPAGNVGQIRTNCRRVN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	0	1
AT3G09110			Protein of unknown function (D...		Lus10003163 [exp]	2.0	0.8296
AT2G19050			GDSL-like Lipase/Acylhydrolase...		Lus10002771 [exp]	2.0	0.8055
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	2.2	0.8358
AT3G05610			Plant invertase/pectin methyle...		Lus10020681 [exp]	5.5	0.7992
AT5G04885			Glycosyl hydrolase family prot...		Lus10008434 [exp]	6.9	0.7279
AT1G32730			unknown protein		Lus10000258 [exp]	7.5	0.8228
					Lus10003370 [exp]	14.4	0.7625
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017982 [exp]	16.0	0.6520
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10038395 [exp]	17.4	0.7150
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004181 [exp]	19.4	0.7165

Compare expression of checked genes

Lus10025256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.