Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40435 130 / 9e-39 unknown protein AT3G56220 125 / 1e-36 bHLH transcription regulators (.1) AT1G29270 43 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009089 [exp] 245 / 2e-83 AT2G40435 129 / 2e-38 unknown protein Lus10017415 [exp] 144 / 7e-44 AT2G40435 146 / 3e-45 unknown protein Lus10010217 [exp] 140 / 1e-42 AT2G40435 152 / 1e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132600 [exp] 145 / 8e-45 AT2G40435 155 / 2e-49 unknown protein Potri.006G106900 [exp] 144 / 2e-44 AT2G40435 150 / 4e-47 unknown protein Potri.019G126800 [exp] 124 / 2e-36 AT2G40435 144 / 1e-44 unknown protein Potri.013G154100 [exp] 124 / 3e-36 AT2G40435 126 / 9e-38 unknown protein Potri.004G060800 [exp] 61 / 6e-12 AT1G29270 69 / 4e-15 unknown protein Potri.011G070000 [exp] 50 / 4e-08 AT1G29270 75 / 2e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025257 pacid=23157405 polypeptide=Lus10025257 locus=Lus10025257.g ID=Lus10025257.BGIv1.0 annot-version=v1.0 ATGGGATCGAGCAGCAAGAAGCAGAAGGAGAAGCTGAGGAAGAAGAAGGATTCCCTCTTCGACAATCTCCAGCTTCTCCGTGCTGTTACCAACTCTTCCG CTACGAACAAGGAATCCATCATAGTCGACGCGACCAAGTACATCGAGGAGCTGAAGGAGAAAGTCGAACGTTTGAGCCACGACGGAGATCGTCAGTGTAC CGCCGAAGCTTCATCCTCGTCTTTCAATTCTCTGCCGATGGTAAACGTGGAAACCCTAGAGAAAGGGGAGTTCTTGATAAACGTGGTGTCGGAAAACAAC TGCCCAGGTTTGCTGGTGTGGATTCTGGAAGCCTTCCATGAATTGGGGCTCGATGTTCTGAATCTGGATGCTAGGGTTTCCTCTTCCGACACTTTCCAAC TCCAAGCTGTTGGCGGCGGCGATAATCAAGACAGCATGGATGGTGAAATGGTGAGGGAAGCGGTGGAGGAAGCCATAAACAACTGGAATGCAACTACAGC TGCTGCTACTACTACTACTAGTCCTGATCATGATGATCATGACCAAAATGACGACGATACTTAA
AA sequence Show only first row Show all	>Lus10025257 pacid=23157405 polypeptide=Lus10025257 locus=Lus10025257.g ID=Lus10025257.BGIv1.0 annot-version=v1.0 MGSSSKKQKEKLRKKKDSLFDNLQLLRAVTNSSATNKESIIVDATKYIEELKEKVERLSHDGDRQCTAEASSSSFNSLPMVNVETLEKGEFLINVVSENN CPGLLVWILEAFHELGLDVLNLDARVSSSDTFQLQAVGGGDNQDSMDGEMVREAVEEAINNWNATTAAATTTTSPDHDDHDQNDDDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40435			unknown protein		Lus10025257 [exp]	0	1
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	2.2	0.8467
AT5G56950		NFA3, NFA03, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10001231 [exp]	6.5	0.7719
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	6.8	0.8322
AT5G36250			Protein phosphatase 2C family ...		Lus10012218 [exp]	9.4	0.7526
					Lus10025229 [exp]	10.9	0.8008
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10014265 [exp]	11.0	0.7609
AT5G49170			unknown protein		Lus10022872 [exp]	15.0	0.8084
AT4G30850		HHP2	heptahelical transmembrane pr...		Lus10036605 [exp]	15.7	0.7500
AT5G66840			SAP domain-containing protein ...		Lus10008134 [exp]	18.0	0.8195
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	18.7	0.7341

Compare expression of checked genes

Lus10025257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.