Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51710 50 / 7e-08 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009088 [exp] 132 / 5e-37 AT3G51710 360 / 1e-119 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132500 [exp] 77 / 2e-17 AT3G51710 464 / 2e-161 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.019G007600 [exp] 40 / 0.0002 AT5G60900 428 / 6e-139 receptor-like protein kinase 1 (.1) Potri.019G011302 [exp] 40 / 0.0002 AT5G60900 430 / 1e-139 receptor-like protein kinase 1 (.1) Potri.019G007300 [exp] 40 / 0.0002 AT5G60900 430 / 2e-139 receptor-like protein kinase 1 (.1) Potri.019G011750 [exp] 39 / 0.0004 AT5G60900 443 / 8e-145 receptor-like protein kinase 1 (.1) Potri.007G111200 [exp] 39 / 0.0006 AT5G60900 439 / 4e-143 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10025258 pacid=23157412 polypeptide=Lus10025258 locus=Lus10025258.g ID=Lus10025258.BGIv1.0 annot-version=v1.0 ATGAGGGAGGCAGACGGTAAGGCGAACGTTAGTAAGGAAGATTGCGCCAAATCTTGCTTGGAAGATTGTAATTGTGTGGCGGCTCTGTATGATACTTCTT ATTCTGCCGCCGCTGGAGAAGGTGGGAGTGACATTGGGGAGTGTTACGTTTACGGGGTGGCGATGGGAGTGAAACAGGCGGAGGCGACAGAGAAAGGGAT GTTGACTTATATGGTCAAAGTCAAGCAAGGAAGTTATGAGTCGGGTCGGTCTGGAAAAGCAGGTTTGAAGAGATGGGTGGCGGTGTTGGTGGGAGTTGTT GATGGGTTTGTCGTTTTGTGTGTTGTTGGTGGGATTGGGTACTACTATTTGATCCGGCGGAGGAGAAAGGAGACGGAGGGGGCGGGTCAATCGGAACCTG GTAATAATGAGACGTAA
AA sequence Show only first row Show all	>Lus10025258 pacid=23157412 polypeptide=Lus10025258 locus=Lus10025258.g ID=Lus10025258.BGIv1.0 annot-version=v1.0 MREADGKANVSKEDCAKSCLEDCNCVAALYDTSYSAAAGEGGSDIGECYVYGVAMGVKQAEATEKGMLTYMVKVKQGSYESGRSGKAGLKRWVAVLVGVV DGFVVLCVVGGIGYYYLIRRRRKETEGAGQSEPGNNET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51710			D-mannose binding lectin prote...		Lus10025258 [exp]	0	1
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	2.2	0.9480
AT2G44260			Plant protein of unknown funct...		Lus10033542 [exp]	5.1	0.9234
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Lus10035373 [exp]	6.2	0.9326
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	7.7	0.9474
AT5G02090			unknown protein		Lus10010878 [exp]	13.2	0.9376
					Lus10013034 [exp]	14.7	0.9373
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	15.2	0.9404
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	15.2	0.9418
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	15.4	0.9355
AT4G16400			unknown protein		Lus10004418 [exp]	20.9	0.8832

Compare expression of checked genes

Lus10025258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.