Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14160 309 / 6e-102 2-oxoglutarate-dependent dioxygenase family protein (.1) AT5G01780 300 / 3e-99 2-oxoglutarate-dependent dioxygenase family protein (.1.2) AT3G14140 251 / 4e-79 2-oxoglutarate-dependent dioxygenase family protein (.1) AT1G11780 54 / 8e-08 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033471 [exp] 282 / 2e-92 AT3G14160 305 / 2e-100 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10009087 [exp] 251 / 9e-84 AT5G01780 176 / 1e-54 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Lus10037023 [exp] 55 / 3e-08 AT1G11780 472 / 3e-168 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10015782 [exp] 54 / 9e-08 AT1G11780 473 / 8e-169 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132300 [exp] 342 / 2e-115 AT5G01780 307 / 1e-101 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Potri.003G070100 [exp] 301 / 2e-98 AT3G14160 348 / 2e-115 2-oxoglutarate-dependent dioxygenase family protein (.1) Potri.003G171900 [exp] 56 / 1e-08 AT1G11780 468 / 3e-166 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025260 pacid=23157316 polypeptide=Lus10025260 locus=Lus10025260.g ID=Lus10025260.BGIv1.0 annot-version=v1.0 ATGAACTGCAGCTGCACCGTCAACACAGCTGTTCAAGGTTTAGGCGCCAGCTACAGTTCTTCGATTCATTCGGAAACCAATTTTAACCAGGCAGTAGCAG ACAAAGAAAAGCAATCGACCATTTCGAAACAGGAAACAAAGGTTAACTATTCCAAGATACATCCACAGAAAGTTCGTATGCCTGGTTCTAATAGTAAGAG GAGAAGAATCAGAATCGATCTGGGATCAGGGGAAATCAACTCACATATGGAAGATTTCGCAAGTGGGAGCGAGGACCGTGAATCTTCCCTTCCAACCGAA TTCGGAAAGAAGCGAATTGGACGAGCTAAAAAGTCCGATTCCAGTGAAAGGGTTTCTAAATCAGTTAACACGAAAGAATCTTCACTTGTTTCGGAACCAT TTGACATCTGCCAGCGGGAAAGCAACGAATTGCAGTGCCTGCAAAATGTGGATCGCCATGTTGTAACGAAGCAAGAGATATTAAGGCCTGGAATGGTTCT GCTTAAGCATTACCTCTCACATGATTCTCAGGTGGAGATAGTGAAGACTTGCAGAGAATTGGGTATGGGGAAGGGTGGATTTTACAGGCCTGGATACCAA GATGGAGCCAAACTCCGGCTCTATATGATGTGTCTTGGATTGGATTGGGATCCGGAAACAAGAAGGTATGAAAAGACGAGGCGAATCGACGATGCTGAAG TCCCCAAAATTCCTTACGGATTTGAAATGTTGGTAATGAGAGCAATTGAGGATGCTCATGATCTTATCAGAACGAATAGCAATGAGAGCAATGTGGAAGA TATTCTTCCTGCAATGATTCCGAACATATGCATTGCCAACTTCTACACAGCTAGTGGACGACTTGGACTTCATCAGGATCGAGACGAAAGTAGGGAGAGC CTCGAAAGAGGACTTCCCGTAGTCTCGTTCTCAATCGGTGATTCTGCAGAGTTCCTGTATGGAGATCAGAGGGATAAGGACATGACAGAGAGGGTTACGC TGGAATCGGGAGACGTGGTGATATTCGGAGGGAAGTCTAGACATATTTTTCATGGTGTTGAATCCATCATCCCACATTCAGCTCCCAAGTCCTTGGTCGA AGAAACAGGGCTTCGCGAAGGGCGTCTCAATCTCACTTTCAGACAATACTGA
AA sequence Show only first row Show all	>Lus10025260 pacid=23157316 polypeptide=Lus10025260 locus=Lus10025260.g ID=Lus10025260.BGIv1.0 annot-version=v1.0 MNCSCTVNTAVQGLGASYSSSIHSETNFNQAVADKEKQSTISKQETKVNYSKIHPQKVRMPGSNSKRRRIRIDLGSGEINSHMEDFASGSEDRESSLPTE FGKKRIGRAKKSDSSERVSKSVNTKESSLVSEPFDICQRESNELQCLQNVDRHVVTKQEILRPGMVLLKHYLSHDSQVEIVKTCRELGMGKGGFYRPGYQ DGAKLRLYMMCLGLDWDPETRRYEKTRRIDDAEVPKIPYGFEMLVMRAIEDAHDLIRTNSNESNVEDILPAMIPNICIANFYTASGRLGLHQDRDESRES LERGLPVVSFSIGDSAEFLYGDQRDKDMTERVTLESGDVVIFGGKSRHIFHGVESIIPHSAPKSLVEETGLREGRLNLTFRQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10025260 [exp]	0	1
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	4.2	0.9554
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	5.0	0.9608
AT4G19160			unknown protein		Lus10038244 [exp]	7.1	0.9505
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	8.7	0.9548
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10033968 [exp]	14.0	0.9348
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	15.1	0.9503
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	16.7	0.9472
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	17.3	0.9523
					Lus10041676 [exp]	19.1	0.9411
AT5G66930			unknown protein		Lus10019643 [exp]	20.2	0.9395

Compare expression of checked genes

Lus10025260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.