Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38400 723 / 0 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G08860 721 / 0 PYD4 PYRIMIDINE 4 (.1) AT4G39660 624 / 0 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT1G80600 203 / 6e-60 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 162 / 1e-44 DELTA-OAT ornithine-delta-aminotransferase (.1) AT3G22200 159 / 3e-43 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G48730 94 / 1e-20 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 91 / 1e-19 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G57590 49 / 8e-06 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009086 [exp] 856 / 0 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10004480 [exp] 624 / 0 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10029922 [exp] 614 / 0 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10008025 [exp] 199 / 3e-57 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 191 / 2e-55 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 160 / 2e-43 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 160 / 2e-43 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10003810 [exp] 154 / 7e-41 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10010465 [exp] 153 / 7e-41 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106800 [exp] 754 / 0 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 748 / 0 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.007G085600 [exp] 624 / 0 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.005G082100 [exp] 243 / 3e-78 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1) Potri.007G080000 [exp] 212 / 9e-67 AT4G39660 278 / 5e-93 alanine:glyoxylate aminotransferase 2 (.1) Potri.017G053500 [exp] 205 / 9e-61 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.005G095800 [exp] 202 / 2e-59 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 164 / 4e-45 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.006G020900 [exp] 164 / 1e-44 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.016G018500 [exp] 162 / 6e-44 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10025262 pacid=23157329 polypeptide=Lus10025262 locus=Lus10025262.g ID=Lus10025262.BGIv1.0 annot-version=v1.0 ATGCAGAGGTTGGCCGCGAGGAGTGGATTACTAAGAGAGGGAAGGAGGATAAGAGGATCCAATTCGCTTTTCCGGTCGCAATCATCGCAGACTGTTGCTC AGAGGAAGAAAGAAGAAGATAATTATGACGCTCTCCCAAAAATGCCTTCCTTCGATTACGCTCCGGCACCGTACACCGGTCCTCCCGCCGACGAGATTTT ATCTAAACGTCGCCAGTTCCTCAACCCTTCCATTTTCCATCTGTATCAGAACCCCGTCAACATCGTTGAAGGGAGGATGCAGTATCTGTACGACGAAAAC GGCCGTCGGTATTTGGACGGATTCGGAGGGATTGCTACGGTGAACTGCGGCCACTGTCATCCTGATGTGGTGGATGCAATCGTAAACCAGGTGAAGCGCA TCCAGCATCCAACCACGCTCTATCTCAACCATGCTGTTGCTGATTTCGCTGAGGCTTTGGCCTCCAAGATGCCAGGCAATCTTAAGGTGGCGTTCTTCAC AAATTCTGGAACAGAAGCCAACGAGCTGGCCATGATGATGGCGAGGATGTACACTGGGTCTCACGATATGATATCGGTGAGGAATTCGTACCATGGAAAT GCTGCTGCGACGATGAGTGCTACCGGCCAACGAAACTGGAAGTTCGGTTCCATGCAGAGCGGGATTCACCATGTGCTGAACCCGGATCCATACAGAGGTG TATTTGGTTCTGATGGAGAGAAGTATGCGAGAGACGTCCAGGATACCCTTGATTTTGCAACCACTGGCCAAGTTGCTGGATTCATTTCTGAAGCTATACA GGGAGTTGGTGGAATCATTGAAGCAGCACCTGGTTATCTCCCAGCTGTGTATAAAACCGTTAGGGAAGCTGGAGGCGTTTGTATTGCAGACGAAGTTCAG TGTGGCGTTGCTCGCACTGGATATATGTGGGGATTTGAAGCACATGGTGTTGTTCCTGATATTGTCACAATGGCAAAGGGACTTGGTAACGGCATGCCTC TTGGTGCTGTAGTGACCACCCCTGAGATCGCTGAGGTGTTAACCCGCCGCAGTTACTTCAACACATTTGGTGGGAATCCTGTTAGTACAGCTGCAGGGCT GGCCGTTTTGAGAGTGATAGAGAAAGATAACCTCCGGGAAAATGCTTCGGTGGTGGGGGGCTACCTGAAAGATAGACTGACTGCACTCAAAGACAAATAC GAAATTATTGGTGATGTAAGGGGAAGAGGGATGATGCTTGGAGTCGAACTCGTCAGCGACCGCGAGAAGAAAACTCCTGCAAATGCTGAAATTGTCCATA TACTGAACCAGATGAAAGAAATGGGAGTCTTGGTTGGCAAGGGAGGGTTCTACGGAAACGTTTTCAGAATCTTACCACCTCTCTGCTTCACTAAAGCAGA TGCAGATTACCTTGTCGATGTTATGGATTACTCCTTGTCAAAGATATGA
AA sequence Show only first row Show all	>Lus10025262 pacid=23157329 polypeptide=Lus10025262 locus=Lus10025262.g ID=Lus10025262.BGIv1.0 annot-version=v1.0 MQRLAARSGLLREGRRIRGSNSLFRSQSSQTVAQRKKEEDNYDALPKMPSFDYAPAPYTGPPADEILSKRRQFLNPSIFHLYQNPVNIVEGRMQYLYDEN GRRYLDGFGGIATVNCGHCHPDVVDAIVNQVKRIQHPTTLYLNHAVADFAEALASKMPGNLKVAFFTNSGTEANELAMMMARMYTGSHDMISVRNSYHGN AAATMSATGQRNWKFGSMQSGIHHVLNPDPYRGVFGSDGEKYARDVQDTLDFATTGQVAGFISEAIQGVGGIIEAAPGYLPAVYKTVREAGGVCIADEVQ CGVARTGYMWGFEAHGVVPDIVTMAKGLGNGMPLGAVVTTPEIAEVLTRRSYFNTFGGNPVSTAAGLAVLRVIEKDNLRENASVVGGYLKDRLTALKDKY EIIGDVRGRGMMLGVELVSDREKKTPANAEIVHILNQMKEMGVLVGKGGFYGNVFRILPPLCFTKADADYLVDVMDYSLSKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10025262 [exp]	0	1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	4.7	0.9115
AT3G48860			unknown protein		Lus10036015 [exp]	10.0	0.8906
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10011055 [exp]	17.2	0.8666
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10020740 [exp]	18.4	0.8903
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Lus10020459 [exp]	19.5	0.8572
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10006587 [exp]	21.3	0.8029
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	22.0	0.8805
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10015238 [exp]	23.9	0.8342
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	24.6	0.8777
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10001648 [exp]	25.4	0.8614

Compare expression of checked genes

Lus10025262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.