Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08850 1976 / 0 ATRAPTOR1B, RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G01770 1801 / 0 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G08390 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G62020 52 / 4e-06 Coatomer, alpha subunit (.1) AT2G21390 50 / 2e-05 Coatomer, alpha subunit (.1) AT1G11160 48 / 5e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 47 / 0.0001 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 47 / 0.0001 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 47 / 0.0002 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009083 [exp] 2529 / 0 AT3G08850 2031 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10014156 [exp] 1550 / 0 AT3G08850 1330 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10022752 [exp] 679 / 0 AT3G08850 630 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10014157 [exp] 186 / 1e-53 AT3G08850 160 / 9e-46 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10041007 [exp] 67 / 8e-11 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 66 / 3e-10 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10026094 [exp] 55 / 3e-07 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10025780 [exp] 53 / 2e-06 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10037538 [exp] 53 / 2e-06 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106600 [exp] 2187 / 0 AT3G08850 1968 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.016G132000 [exp] 2158 / 0 AT3G08850 1862 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.008G002300 [exp] 63 / 1e-09 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 63 / 2e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 56 / 2e-07 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G074800 [exp] 54 / 7e-07 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 54 / 7e-07 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10025263 pacid=23157330 polypeptide=Lus10025263 locus=Lus10025263.g ID=Lus10025263.BGIv1.0 annot-version=v1.0 ATGGCGTCTCGGTTCTCGCAGACTTCTCTGGCCGTCGTATCCACTCACTACGATGACTTCGCATCTACTCATGGCGATGACGATGCCGTGGATTTAGCTT CACAGAGGAGGGATTCGGAGGCACCTAGTAGTAGTAATAGCTATACCAATGCTGGGGCTAGCGCCTCTACAAGCATGGCCTATTTGCCTCAGACTGTCTT CTTGTGTGAACTTCGCCATGAGGCATTTGAAATTTCTGTTCCTACTGGTCCATCTGACAGTGGTATTGTGTCTAAATGGCGACCTAAAGATCGAATGAAG ACAGGATATGTAGCTCTAGTTTTATGTTTAAACATCAGTGTCGATCCACCGGATGTAATAAAGATTTCACCTTGTGCCCGAATGGAGTGCTGGATAGATC CATTTTCAATGCAACCTTCAAAAGCTCTTGAATCAATTGGTAAGACATTGAGTCTTCAGTATGAAAGATGGCAACCAAGGGCACGGTATAAGGTGCAACT TGATGCTACCGTGGAAGAGGTGAAAAAACTTTGCAATACATGTCGCCGATATGCTAAATCAGAGAGGGTTTTGTTTCATTATAATGGACACGGTGTCCCA AAGCCAACCCCTAATGGTGAAATTTGGCTTTTCAACAAGAGTTATACACAGTACATACCGTTGCCTATCAATGATCTTGATTCCTGGTTGAAAACACCGT CCATCTATGTCTTTGACTGTTCTGCCGCTGGGATCATTGTGAATGCCTTCATTGAGCTTCATGACTTGAATGCTCCAACATCTTCGGGGTCTACAAGAGA CTGCATTTTGCTTGCAGCTTGTGAAGCACATGAGACGCTACCTCAAAGTCCTGAATTTCCTGCTGATGTGTTTACTTCTTGCTTGACTACCCCCATTAAG ATGGCATTGAGATGGTTTTGCACACGTTCTTTACTTCGCGACACCCTTGATTATTCATTAATTGACAAGATTCCTGGTCGTCAAAATGACCGCAAAACCC TGCTTGGGGAGTTGAACTGGATCTTTACTGCAGTGACTGATACTATTGCTTGGAATGTTCTTCCTCATGATCTTTTCCAAAGACTGTTTAGACAAGATTT GTTGGTCGCCAGTCTATTCCGGAACTTTTTGCTTGCTGAGAGAATCATGCGCTCAGCAAACTGTTCCCCAATTTCTCACCCAATGTTGCCACCTACACAT CAACACCATATGTGGGATGCATGGGATATGGCTGCTGAAATTTGTCTTTCTCAACTTCCATCGTTGGTTGAGGACCCTAATGCAGAGTTCCAGCCGAGTC CCTTTTTCACTGAACAACTGATGGCCTTTGAGGTATGGTTAGATCATGGCTCAAAAGATAAAAAACCTCCAGAGCAGTTACCTATTGTGCTTCAGGTTCT TCTTAGTCAGTGCCACCGATTTAAAGCTTTGGTTCTTCTGGGAAGGTTCTTGGACATGGGTCCCTGGGCAGTGGATCTGGCATTGTCTGTTGGAATATTC CCTTATGTATTGAAGTTGCTTCAAACAACGACACCAGAACTTAGGCATATCCTTGTGTTTATATGGACGAAGATACTAGCTCTTGATAAGTCATGCCAGG TTGATCTTGTCAAGGATGGTGGACATACATATTTCATACGGTTTCTTGATAGCCTGGAAGCATATCCTGAACAGCGTGCCATGGCTGCATTTGTTTTGGC TGTCATTGTTGATGGCCACAGGCGGGGCCAGGAAGCTTGTACTGAAGCTGGTTTAATCCATGTATGCTTGAAGCATCTGCAAGGTTCAACCCCAAACGAT GGACAGTCTGAGCCATTGTTTCTTCAGTGGGTTTCTCTGTGTCTAGGGAAGCTTTGGGAAGATTTTACAGATGCTCAGATCATGGGTTTGCAGGCAGATG CCCCTGGGATTTATGCTCCATTACTGTCTGAGCCCCAGCCCGAGGTTCGAGCATCTGCCGTTTTTGCTTTGGGAACCCTGCTAGACATTGGCGGTGATGC TTGCCAAGATAGTGTTGGAGGAGATGATGAGTATGACGATGATGAAAAACTTAGGGCTGAGAATAGTATAGTTAAAAGCATATTAAGTGTTTTTTCTGAT GGAAGCCCACTGGTCAGGGCAGAGGTTGCTGTTGGTATGTATCTGAATGTTCCTTATGGCCCTACACTGTCTTCCCATACTTCATCATTGGGGCGCTTTG CATTTGGCCACAAGCAGCACCTCAAATCCATTGCTACTGCGTATTGGAAGCCTCAGTCTACCTCAGTATTGAATTCATTACCTTCTTTGGCTCACATAAA AGCAACTGGCAGTGGATACACTAACACAAACCAGTATATGCCTCATGCAAGTATCATTGCATCCCAAATTGGTCCACTGACAAGAGTGGGCAGTGACACT ACATCAGTGGTGCGCGAGGGAAGAGTTTCTGCCAGTAGTCCCCTTGCTGGTACAGGAATCATGCACGGGTCACCATTATCTGATGATTCTTCTCATCATT CCGATTCTGGTATCCTTAGTGATGTCGTAAGCAATGGAGGGGTGAATCATTTGAGGCCAAGAGCTCTGGATAATGCTATCTATTCACAATGCGTGCTGGC CATGCTAACTTTGGCGAAGGATCCTTCACCGCGGATAGCAAGCCTTGGGCGCAAAGTACTGTCAATCATTGGGATTGAGCAAGTTGTAGCAAAACCTTTG AATTCCTCTGGCAGCAATCGTCACCCTATTGAAACTACAAGTTCATCCCCAGCTCCAAGTCTTGTTGCGGGGTTGGCGCGATCATCATCCTGGCTTGACA TGAATGCAGGTCAGCTGCCGTTGACATTCAGAACTCCACCAGTTAGCCCTCCCCGAACTAGTTACTTAACAGGAATGCGTAGAGTTTGTTCTTTGGAGTT CAGACCTCATTTGATGAGTTCCCCAGATTCTGGGTTGGCCGACCCTCTTCTGGGCTCGGGTGGGGTTTCTGGAGGTTCAGAACACAGTCTTCTTCCTCCA TCGACAATCTACAACTGGAGTTCGGGTCATTTCTCCAAGCCGCTTCTTACTGCCACTGATGATAGTGAAGAGATGCTGATAAGACGAGAAGAGAGGGAAA AGTTTGCTCTGGAGCACATTGCAAAGTGCCAGCACTCTTCTGTTAGTAAGCTTAATAATCAAATAGCTGGATGGGATACAAAGTTTGAAGCTGGCACCAA AGCAGCACTGCTTCAGCCTTTTTCTCCTATTGTAGTTGCTGCAGATGATAATGAACGGATTAGGGTGTGGAACTACGAAGAGGCTTCCCTTCTAAATGGG TTTGACAATCATGATTGTCCTGACAAAGGAATTTCCAAGCTTTGCCTCGTGAATGAGCTAGATGACAGCATGCTTCTTGTTGCTTCAGGTGACGGTAACA TTCGGATTTGGAAAGATTATACTGTAAAGGGGAAACAAAAACTTGTTACTGCATTTTCTTCTCTCCAAGGTCATAAAGCTGGCATACGTACTTTGAATGC CGTTGTGGATTGGCAACAACAATCTGGTTATCTGTATGCTTCCGGTGAGGTATCCTCCGTGATGCTATGGGACTTGGAGAAAGAACAGCTTGTCAATTCT ATTGCATCATCATCAGATTGTAGTTGCTCATCACTGTCTGCTTCTCAAGTTCATGGAAGTCAATTCGCAGCGGGTTTTCTTGATGGTTCAGTAAGATTGT ATGATATTCGTACACCTGAAACGCCTGTTTGCACGATGCGACCTCACACCCAAAAGGTAGAAAGAGTAGTTGGTATTGGGTTTCAGCCCGGACTTGATCC TGCCAAGATTGTCAGTGCTTCCCAGGCTGGCGATATTCAGTTCCTGGACATCAGAAATCAAAGAGATGCCTATCTCACAATTAATGCCCACAGGGGCTCA CTTACGTCGTTAGCTGTTCATAGGCATGCTCCCATAATTGCCAGTGGCTCAGCGAAGCAGATTATCAAAGTATTTAGTCTTGAGGGTGCTCAACTCGGAA CCATTCGTTACTACTCCACCTTCATGGCACAGAAGATCGGTTCCGTTGGTTGCCTTACTTTCCATCCTTATCAACTTCTCCTTGCTTCAGGAGCTGCCGA TGCTTATGTATCTATCTGGGCTGATGATAGCACTCAGGCAAGGTGA
AA sequence Show only first row Show all	>Lus10025263 pacid=23157330 polypeptide=Lus10025263 locus=Lus10025263.g ID=Lus10025263.BGIv1.0 annot-version=v1.0 MASRFSQTSLAVVSTHYDDFASTHGDDDAVDLASQRRDSEAPSSSNSYTNAGASASTSMAYLPQTVFLCELRHEAFEISVPTGPSDSGIVSKWRPKDRMK TGYVALVLCLNISVDPPDVIKISPCARMECWIDPFSMQPSKALESIGKTLSLQYERWQPRARYKVQLDATVEEVKKLCNTCRRYAKSERVLFHYNGHGVP KPTPNGEIWLFNKSYTQYIPLPINDLDSWLKTPSIYVFDCSAAGIIVNAFIELHDLNAPTSSGSTRDCILLAACEAHETLPQSPEFPADVFTSCLTTPIK MALRWFCTRSLLRDTLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTH QHHMWDAWDMAAEICLSQLPSLVEDPNAEFQPSPFFTEQLMAFEVWLDHGSKDKKPPEQLPIVLQVLLSQCHRFKALVLLGRFLDMGPWAVDLALSVGIF PYVLKLLQTTTPELRHILVFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQEACTEAGLIHVCLKHLQGSTPND GQSEPLFLQWVSLCLGKLWEDFTDAQIMGLQADAPGIYAPLLSEPQPEVRASAVFALGTLLDIGGDACQDSVGGDDEYDDDEKLRAENSIVKSILSVFSD GSPLVRAEVAVGMYLNVPYGPTLSSHTSSLGRFAFGHKQHLKSIATAYWKPQSTSVLNSLPSLAHIKATGSGYTNTNQYMPHASIIASQIGPLTRVGSDT TSVVREGRVSASSPLAGTGIMHGSPLSDDSSHHSDSGILSDVVSNGGVNHLRPRALDNAIYSQCVLAMLTLAKDPSPRIASLGRKVLSIIGIEQVVAKPL NSSGSNRHPIETTSSSPAPSLVAGLARSSSWLDMNAGQLPLTFRTPPVSPPRTSYLTGMRRVCSLEFRPHLMSSPDSGLADPLLGSGGVSGGSEHSLLPP STIYNWSSGHFSKPLLTATDDSEEMLIRREEREKFALEHIAKCQHSSVSKLNNQIAGWDTKFEAGTKAALLQPFSPIVVAADDNERIRVWNYEEASLLNG FDNHDCPDKGISKLCLVNELDDSMLLVASGDGNIRIWKDYTVKGKQKLVTAFSSLQGHKAGIRTLNAVVDWQQQSGYLYASGEVSSVMLWDLEKEQLVNS IASSSDCSCSSLSASQVHGSQFAAGFLDGSVRLYDIRTPETPVCTMRPHTQKVERVVGIGFQPGLDPAKIVSASQAGDIQFLDIRNQRDAYLTINAHRGS LTSLAVHRHAPIIASGSAKQIIKVFSLEGAQLGTIRYYSTFMAQKIGSVGCLTFHPYQLLLASGAADAYVSIWADDSTQAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10025263 [exp]	0	1
AT2G25730			unknown protein		Lus10007687 [exp]	1.4	0.9493
AT5G07940			unknown protein		Lus10021162 [exp]	1.7	0.9438
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Lus10023408 [exp]	3.2	0.9327
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	3.5	0.9433
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10035661 [exp]	3.7	0.9444
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	7.9	0.9345
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	9.8	0.9225
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	10.9	0.9210
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	11.0	0.9226
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	11.5	0.9307

Compare expression of checked genes

Lus10025263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.