Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38410 383 / 1e-123 ENTH/VHS/GAT family protein (.1) AT5G01760 330 / 6e-105 ENTH/VHS/GAT family protein (.1) AT4G32760 275 / 2e-82 ENTH/VHS/GAT family protein (.1.2) AT1G21380 254 / 2e-76 Target of Myb protein 1 (.1) AT1G76970 250 / 2e-75 Target of Myb protein 1 (.1) AT3G08790 238 / 3e-69 ENTH/VHS/GAT family protein (.1) AT5G63640 179 / 2e-49 ENTH/VHS/GAT family protein (.1) AT5G16880 120 / 6e-29 Target of Myb protein 1 (.1.2.3) AT1G06210 99 / 6e-22 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022753 [exp] 550 / 0 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 539 / 0 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10009082 [exp] 352 / 2e-107 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10022140 [exp] 265 / 2e-78 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10028649 [exp] 253 / 1e-73 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10029739 [exp] 246 / 2e-73 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10018948 [exp] 244 / 2e-73 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10042770 [exp] 241 / 2e-71 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10022667 [exp] 188 / 1e-52 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106500 [exp] 499 / 6e-169 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.016G131900 [exp] 493 / 5e-166 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G241000 [exp] 279 / 4e-84 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.018G039100 [exp] 276 / 8e-83 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 259 / 3e-78 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 255 / 1e-76 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.T010700 [exp] 185 / 9e-52 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 185 / 9e-52 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 182 / 7e-51 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.019G050000 [exp] 120 / 3e-29 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10025264 pacid=23157340 polypeptide=Lus10025264 locus=Lus10025264.g ID=Lus10025264.BGIv1.0 annot-version=v1.0 ATGGCTATGGCTTCTTCGTCTTCGGCTACGGTCGCGGTCGACAAGGCCACCAGCGACCTTCTCATCTCACCTGACTGGACCATGAACATTGATATCTGCG ATTCCATCAACTCTAACCACTGGCAAGCGAAAGATGTGGTGAAAGCTGTGAAGAAACGGCTGCAGCACAGGAATCCTGGAGTTCAGCTACTTGCTCTAAC GCTATTGGAGACGATGGTGAAGAACTGTGGTGATTTCGTCCATTTCCAAATTGTCGAGAAGAATATACTGGGCGAAATGGTGAAGATCGTGAAGAAAAAG ACAGATCTACATGTTAGGGATAAAATTCTGGTTCTGCTGGACTCTTGGCAAGAGGCGTTTGGTGGAGCTGGAGGAAAATATCCTCAATTTTATTGGGCTT GTGAGGATGTTAGGCGTTCTGGAATAGATTTCCCCCCACGTTCATTAGATGCAGCTCCAGTATTTACACCACCGCTCACCCATTCGACTTTGGGGAATGC TCTACCTGGATTTGGGATTCCTGGAGGTCCTTCTAGAAGACTTGATGAAACCATGGCTACAGAGATAGAAGGTTTAAGTTTGTCAAGCCTGGAATCCATG CGCAATGTTATGGACCTCTTGAGGGATATGTTGCAAGCTGTTGGCCCTGATGACCATGAGGCTGTAAAAGACGAGGTGATAGTTGATCTCGTTGAACGTT GTCGATCCAACCAGAAAAAGTTGATGCAGATGCTGACTACGACTGGGGATGAGGAAGTTCTTGTTCAGGGCCTCGAGTTAAACGACAGCTTGCAGATCCT GCTGGAAAAACATGATGCCATAGCTTCAGGTTCAGCCATGCGTACACTGGCTTCACAATTCAGGTCTGAAGAAAGAGATCTTTCTTCGCCAAACACAAAA CCTAACGAAGTAAATGAACAGACTCCAGGGCCCAGCACTGAATCAAACACAATGGTATCTAACATAACGAATGACCATGTGGATGAAGATGATGAAGAAG AAGAGGATGACTTCACACAACTAGCTCGCAGGCACTCCAAAAGTCGGCCTAGTTCTACTGAAGCCATAAATGGAGCTACATCTGGAGTACTCGTACCTGT AGAGCCCTATCAAACATCCTCAGCAGCTGCATCGTCGTCGCCCGCTTTAGAGATAGCCAATCCATATACTTCATCTATGAGTAGACAAGAGCAAGATCTG ATTGACCTCTTAAGTATTACCTTGTCAACGAACGAATCCAGCACTTCTCAGACCATACCAATTCCAGTTTCCTCCGGCACAGAAGTTTGTCCTGGTAGTC AGGGCCCGACAGCCTATAGTAGTTATGTCGCTCCATGGGCTCAATCTCAACAGCAGCAGCACTCGCAGTCGCTGCAGATTCCGTCACCGTCTCAATCTCA GCCACAATTGCACCAACAGCATCCACAGTATTTGCAGCAGCCACAGATTCCAGCGCCGTCTCAATCTCAGCCACAGCAACAACAACAACAACAACAACAA CAGCATCCTCAATACTCACAACAGCCCCATATGCCGCCTCAATCTCAGCCACAGCAACAACAACCACATCCTCAGTACTCACACCAGCCGCGTATTCCGT CGCCGTCTCAGTCTCAGCCACATCTGCATCAACAGCAACCGCAATTTCAGCACCAGTGCCAACCACATTCCCACCCACAGTTTCATCCACAACAACCTCA ATATCCTCAGTACTCATCAGGATACCCACCACCACCGTGGGCAGGTACTCCAGGTTATGCCACTGGTACCAGCCAAACTTACATGGCCGATAATAATAAT AATAATACGTTTTCAAGCCCGCATGGGACCGCTACTACGTCAATTTCACCGGGGCAGAATTATGGTACTTCACCTCTGATTGGAAGCGATGGGACTACTA CAAATGGTGACCCTTTCATGGGTTCCGGGGTGAGAGCTTCTGCACAACCTGCAGCGCAGAAACCGTTTGTCCCGTCGTACAAGTTGTTTGAAGATCTGAA TGTACTTGGCAATGCAGATGGGAATTCCAAATCAACCAACGGTAATGGGGGGCCGAGCTTGTCAAGTTCTTCAGGCCAAAGCATGATGAATGCTAGGAAA TAA
AA sequence Show only first row Show all	>Lus10025264 pacid=23157340 polypeptide=Lus10025264 locus=Lus10025264.g ID=Lus10025264.BGIv1.0 annot-version=v1.0 MAMASSSSATVAVDKATSDLLISPDWTMNIDICDSINSNHWQAKDVVKAVKKRLQHRNPGVQLLALTLLETMVKNCGDFVHFQIVEKNILGEMVKIVKKK TDLHVRDKILVLLDSWQEAFGGAGGKYPQFYWACEDVRRSGIDFPPRSLDAAPVFTPPLTHSTLGNALPGFGIPGGPSRRLDETMATEIEGLSLSSLESM RNVMDLLRDMLQAVGPDDHEAVKDEVIVDLVERCRSNQKKLMQMLTTTGDEEVLVQGLELNDSLQILLEKHDAIASGSAMRTLASQFRSEERDLSSPNTK PNEVNEQTPGPSTESNTMVSNITNDHVDEDDEEEEDDFTQLARRHSKSRPSSTEAINGATSGVLVPVEPYQTSSAAASSSPALEIANPYTSSMSRQEQDL IDLLSITLSTNESSTSQTIPIPVSSGTEVCPGSQGPTAYSSYVAPWAQSQQQQHSQSLQIPSPSQSQPQLHQQHPQYLQQPQIPAPSQSQPQQQQQQQQQ QHPQYSQQPHMPPQSQPQQQQPHPQYSHQPRIPSPSQSQPHLHQQQPQFQHQCQPHSHPQFHPQQPQYPQYSSGYPPPPWAGTPGYATGTSQTYMADNNN NNTFSSPHGTATTSISPGQNYGTSPLIGSDGTTTNGDPFMGSGVRASAQPAAQKPFVPSYKLFEDLNVLGNADGNSKSTNGNGGPSLSSSSGQSMMNARK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38410			ENTH/VHS/GAT family protein (....		Lus10025264 [exp]	0	1
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	6.9	0.9519
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10007727 [exp]	8.9	0.9509
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	9.1	0.9524
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10027949 [exp]	10.0	0.9208
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	10.0	0.9522
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10022908 [exp]	10.8	0.9378
AT1G18270			ketose-bisphosphate aldolase c...		Lus10002140 [exp]	13.0	0.9458
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018702 [exp]	13.4	0.9484
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	14.1	0.9415
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	16.2	0.9500

Compare expression of checked genes

Lus10025264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.