Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58330 116 / 6e-31 ZW2 transcription factor-related (.1) AT1G09950 103 / 3e-26 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT4G18650 80 / 2e-17 transcription factor-related (.1) AT5G06839 78 / 7e-16 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G77920 69 / 5e-13 bZIP bZIP transcription factor family protein (.1) AT3G14880 68 / 5e-13 unknown protein AT5G06950 67 / 1e-12 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 67 / 2e-12 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT3G12250 67 / 2e-12 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT1G08320 67 / 2e-12 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027812 [exp] 202 / 5e-64 AT1G58330 116 / 1e-31 transcription factor-related (.1) Lus10028231 [exp] 101 / 3e-25 AT1G58330 154 / 8e-47 transcription factor-related (.1) Lus10005041 [exp] 88 / 3e-21 AT1G58330 51 / 1e-14 transcription factor-related (.1) Lus10042453 [exp] 87 / 1e-19 AT3G14880 145 / 3e-42 unknown protein Lus10039193 [exp] 80 / 5e-17 AT3G14880 135 / 5e-39 unknown protein Lus10013746 [exp] 79 / 1e-16 AT3G14880 141 / 5e-41 unknown protein Lus10026217 [exp] 76 / 2e-16 AT3G14880 83 / 7e-20 unknown protein Lus10043387 [exp] 76 / 4e-15 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 74 / 2e-14 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 97 / 2e-23 AT3G14880 159 / 6e-48 unknown protein Potri.004G058200 [exp] 76 / 1e-15 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.007G079900 [exp] 68 / 4e-13 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.009G164300 [exp] 69 / 7e-13 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.008G118300 [exp] 69 / 7e-13 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 69 / 8e-13 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.001G390100 [exp] 67 / 1e-12 AT3G14880 255 / 3e-86 unknown protein Potri.007G085700 [exp] 67 / 3e-12 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.016G036500 [exp] 67 / 4e-12 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.001G029800 [exp] 67 / 5e-12 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025265 pacid=23157357 polypeptide=Lus10025265 locus=Lus10025265.g ID=Lus10025265.BGIv1.0 annot-version=v1.0 ATGCATCATCATCATCAGCAGCGCCGTCCGAGGTCGGCCAGGCCAATCGACGGCGAGAGGGAAAATGCGGCGGAACTGTTCGCGGCTTTCTTCCAAGGCT GGCTAGTCCGTCAGGAGCACTACCTCGACGAGTTAACTACCATGAAAGAAAACATCCGTCAAACCCGACCCGACGACCTACGGGACCTGGTCAACCGGGT CCTGACCCACTACCAGCACTACTACGAGGAGAAGTCCAGGCTGGCTCAGTCCGACATCTTCGTCCTCTTCTCCCCGCCTTGGTTCTCCGCTCTGGAGCGG ACCTTCCTCTGGATCGCCGGGTTCAAACCGGGCCTGGCGTTTCGGGTGCTGGGTGATTCGGTTCATGACCTGACGGAAGACCAGGAGCGGAGTATTCGGA GGCTGAAGGAGGAGACCAGGATGGAGGAGAGGTTGTTGAACGACGAGCTGGCGAGGATCCACGAGAGCGTCGGGGCTCCTCCGGTTTGTGGGTGGGGGAG GAAGCGCGGAAGGGAGGTACTTGATGCGGCGGCGGTAACGGAGGGGGGGGGGGAGGGAGAGGGGGGGGGGGGGGGGGGGGGTTTGGTTGTTTTCGGGGCG GGGGGGGAAAGGAAAAAAATTGAAATCGCTCGCCTCCGCGCTCCTCCGGGTTGTGGGTGGGGGAGGAAGCGCGGGAGGGAGGTTCTTGATGCGGCGGTGG AAGAGGAGGAGGAGGAGGAATCGGTGGCGGCGGCGGATGGTGAAATAAGGTCGGCTTTGGAGTTGTTGGTTGGGAACGCGGATACGTTGAGGACGAATAC AGTGGTGAGGATTGGGCAGATTTTGAGCCCAACGCAGAACGTTGAGTTCGTTACGGCGGGGACCAGGCTCCAGCTCACTGTCAGGGAGTTGGGCGGGATG AGGAAACCTGGCGCCAGAGGAGGTGCTGACTGCTGA
AA sequence Show only first row Show all	>Lus10025265 pacid=23157357 polypeptide=Lus10025265 locus=Lus10025265.g ID=Lus10025265.BGIv1.0 annot-version=v1.0 MHHHHQQRRPRSARPIDGERENAAELFAAFFQGWLVRQEHYLDELTTMKENIRQTRPDDLRDLVNRVLTHYQHYYEEKSRLAQSDIFVLFSPPWFSALER TFLWIAGFKPGLAFRVLGDSVHDLTEDQERSIRRLKEETRMEERLLNDELARIHESVGAPPVCGWGRKRGREVLDAAAVTEGGGEGEGGGGGGGLVVFGA GGERKKIEIARLRAPPGCGWGRKRGREVLDAAVEEEEEEESVAAADGEIRSALELLVGNADTLRTNTVVRIGQILSPTQNVEFVTAGTRLQLTVRELGGM RKPGARGGADC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58330		ZW2	transcription factor-related (...		Lus10025265 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014438 [exp]	4.9	0.7711
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017076 [exp]	5.7	0.7798
AT1G54215			proline-rich family protein (....		Lus10015652 [exp]	5.9	0.7686
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Lus10037183 [exp]	8.1	0.7726
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	8.8	0.8110
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	10.2	0.7838
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	10.5	0.7812
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	17.9	0.7586
AT4G16400			unknown protein		Lus10016614 [exp]	19.9	0.7522
AT1G57680			unknown protein		Lus10008842 [exp]	22.2	0.7460

Compare expression of checked genes

Lus10025265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.