Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64816 210 / 9e-72 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009081 [exp] 241 / 4e-83 AT5G64816 211 / 2e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G156400 [exp] 231 / 6e-80 AT5G64816 185 / 9e-62 unknown protein Potri.002G105400 [exp] 231 / 6e-80 AT5G64816 186 / 5e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025266 pacid=23157450 polypeptide=Lus10025266 locus=Lus10025266.g ID=Lus10025266.BGIv1.0 annot-version=v1.0 ATGGTGGACCCTTGGTGGTCTCTGCTAGGTGCAGCGATACCTGCTGTGATCGCCGGCCAAGCAATCAGGATGAAGAAGAAGAGGGCCGAGGACCAGAGAC TGAAGAGCGCGAGGGGGAGGGAGAAGAGCTCGGACGAGGTGTTTGTGTGCGAGAGGGTGTGCACTTCCAAGAGGATGTTAAAGAAGATGGGCGCACTATC CAAAGACCCGATCCTCGACACTTGCGTCACAGTCTGTGGAGTTTCGGAGATCGATGCTTGTGCAGATGCGTGTGCTAGAACCGTTTGCGTGAACCAGCAC CAGGTCCCTAACTGGAACGATGTGTGCCTCCGGAGGTGCCAGAGCGAGTGCCTTAGGCTGTCTAGTACCTCCTCGACTGCTTCTTGA
AA sequence Show only first row Show all	>Lus10025266 pacid=23157450 polypeptide=Lus10025266 locus=Lus10025266.g ID=Lus10025266.BGIv1.0 annot-version=v1.0 MVDPWWSLLGAAIPAVIAGQAIRMKKKRAEDQRLKSARGREKSSDEVFVCERVCTSKRMLKKMGALSKDPILDTCVTVCGVSEIDACADACARTVCVNQH QVPNWNDVCLRRCQSECLRLSSTSSTAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64816			unknown protein		Lus10025266 [exp]	0	1
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10034286 [exp]	2.0	0.8385
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035122 [exp]	3.2	0.8019
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10018060 [exp]	5.3	0.7605
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	9.0	0.7540
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	9.5	0.7773
AT1G07830			ribosomal protein L29 family p...		Lus10024720 [exp]	16.0	0.7881
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10042654 [exp]	18.4	0.7230
AT4G40030			Histone superfamily protein (....		Lus10012757 [exp]	25.7	0.7184
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	26.1	0.7587
AT2G13690			PRLI-interacting factor, putat...		Lus10033484 [exp]	29.5	0.6346

Compare expression of checked genes

Lus10025266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.