Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51830 731 / 0 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT3G51460 471 / 4e-160 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT5G66020 458 / 4e-155 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G14205 148 / 3e-37 Phosphoinositide phosphatase family protein (.1) AT1G17340 147 / 3e-37 Phosphoinositide phosphatase family protein (.1) AT5G20840 140 / 9e-35 Phosphoinositide phosphatase family protein (.1) AT1G22620 121 / 2e-28 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT3G43220 105 / 1e-23 Phosphoinositide phosphatase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009080 [exp] 933 / 0 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10016697 [exp] 460 / 9e-156 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 448 / 3e-151 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10039913 [exp] 139 / 1e-34 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10027650 [exp] 139 / 2e-34 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10013184 [exp] 117 / 3e-27 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10037446 [exp] 116 / 8e-27 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10014827 [exp] 113 / 6e-26 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118300 [exp] 768 / 0 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.005G100500 [exp] 468 / 7e-159 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.006G136400 [exp] 147 / 3e-37 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.018G063700 [exp] 146 / 1e-36 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.003G071300 [exp] 140 / 7e-35 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 126 / 3e-30 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 110 / 6e-25 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.019G080300 [exp] 105 / 1e-23 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Lus10025267 pacid=23157406 polypeptide=Lus10025267 locus=Lus10025267.g ID=Lus10025267.BGIv1.0 annot-version=v1.0 ATGGAGGCTGATTCTTCCCCTTCGCCTCAGTCGTCGCCGTCGGCGGTGGTCGCCGGTAATAGATTCAGGCTACATGACCGCCTGGAGCTGCTGGAGTTTC AGGACAAGTACGTGATCAAGTCGGTCGAATCTCCTTGTCGAGGCTTCTCCATCAGTCGTGAAGAGGGCGACATCCAGCCTCTCAACGACGCAGATGACAC TTCTTCTGAACGGCCACCCGCGCCCTCCACAATCTATGGAGTCGCTGGAACGATTAGATTGATTGCAGGAACTTATATTCTTGTAATAACTTCTCAAAAG GAAGTCGGGAAGTTCCTCGGGGCTCCAGTATTCCGAGTAATGTCTATGCAGTTTCTGCCCTGCAACGAGGCGTTGAAGTTTTCCACTCCAGACGAAAAGA GGGACGAGGCTTGCTTTAGGAATCTATTGAGAACTGTTGAATCAACTCCTGCCTTGTATTACTCATATGAAACAGACATAACATTGAACTTACAGAGAAG ATGCAAACTAGCTGAAGGGTGGATGGCTAAACCATTTTGGAAACAGGCTGACCCTCAATTTGTTTGGAATCAAAATCTGCTGGAAGATCTCATTGAGGCT AAGGTTAGCTTAGGCTTTGGAGTTACTGAGCTAAAGCTGAAAGAAACATCGCCCATTTCATTAACTCTAATTTCAAGGAGGTGCACACGGCGTCTAGGGA CAAGAATGTGGAGGAGAGGTGCTAACCTTCAAGGAGATACAGCTAACTCGGTTGAATCTGAGCAATTGCTGGAGGTGGAAGGTTTTAGGTCATCATTATT GCAGTTCCGAGGTTCGATTCCTCTTCTCTGGGAGCAAACAGTGGACTTGAGCTATAAACCTCGTCTCAAAATTATCGAAAACGATCAAACGCCAAGAGTT GTGGAGCGCCATTTCCATGATCTTTGCCAACAATATGGAGATGTTTTAGCACTCGATTTGACTAATAACCATGGTGATGAAGGTCTTCTTAGTGCAGCAT ATGCTAATGAAATGCAAAGGCTCCCAAATGTGAGGTATTGCTCATTCGATTTCCACCATGTCTGTGGCAACTCAAATTTTGACAACCTACGGGTTCTCTA TGATCAAATTTCAGAAGATTTCGAAAAGCAAGGATATTTTCAAGTAGACAGCGAGGGGAAAATAGTAGAGGAACAGAAAGGGATCATTAGATCAAATTGC ATTGACTGCCTTGATAGAACAAACGTCACCCAGAGTTTTCTTGCTGAAAAGTCGTTGACAATACAATTACAAAGGATCGGAATACTTGGCCCTGATGAGA GCGTGGCCACTTCCAGTGAGGAGTATGTAAAGTTCAGAACATTGTGGGCTGAGCAAGGGGACGAAATAAGCCTTGGATATGCTGGAACTCACGCCTTGAA AGGGGACCTTGTAAGATACGGGAAGCAGACATTTGGCGGGATGATCAAAGATGGGATGAGCGCTCTCTCGAGATACTACTTGAATAACTTCCAAGATGGA GGGCGGAATGAAATCCCACAGTATCTCCCAGTAGCATCAGTCTTGCTCATCGGAGGAGGGTTGACGGTTACATCCTTCACACTTCATCAAGGTCATTGCT TGCCTGACGTTTTCTCTACCGTTTCCTTCCACTGTTTATCCTTCTCTTGCGAACTGTTTTCTAACCATTACATGGTCTGTGTGCTTTTCGACACGAACAG CGGGGAGAAATGGGCAGCAGTACTTGTCGTCGGTGCTGTGGGCTGGGGTGACGGCAGGAGTAATGGCGGTAGTTAA
AA sequence Show only first row Show all	>Lus10025267 pacid=23157406 polypeptide=Lus10025267 locus=Lus10025267.g ID=Lus10025267.BGIv1.0 annot-version=v1.0 MEADSSPSPQSSPSAVVAGNRFRLHDRLELLEFQDKYVIKSVESPCRGFSISREEGDIQPLNDADDTSSERPPAPSTIYGVAGTIRLIAGTYILVITSQK EVGKFLGAPVFRVMSMQFLPCNEALKFSTPDEKRDEACFRNLLRTVESTPALYYSYETDITLNLQRRCKLAEGWMAKPFWKQADPQFVWNQNLLEDLIEA KVSLGFGVTELKLKETSPISLTLISRRCTRRLGTRMWRRGANLQGDTANSVESEQLLEVEGFRSSLLQFRGSIPLLWEQTVDLSYKPRLKIIENDQTPRV VERHFHDLCQQYGDVLALDLTNNHGDEGLLSAAYANEMQRLPNVRYCSFDFHHVCGNSNFDNLRVLYDQISEDFEKQGYFQVDSEGKIVEEQKGIIRSNC IDCLDRTNVTQSFLAEKSLTIQLQRIGILGPDESVATSSEEYVKFRTLWAEQGDEISLGYAGTHALKGDLVRYGKQTFGGMIKDGMSALSRYYLNNFQDG GRNEIPQYLPVASVLLIGGGLTVTSFTLHQGHCLPDVFSTVSFHCLSFSCELFSNHYMVCVLFDTNSGEKWAAVLVVGAVGWGDGRSNGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	0	1
AT1G07650			Leucine-rich repeat transmembr...		Lus10031374 [exp]	1.0	0.9147
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10007742 [exp]	3.7	0.8809
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	4.7	0.8848
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	4.9	0.9019
AT5G61910			DCD (Development and Cell Deat...		Lus10032533 [exp]	10.2	0.8535
AT2G40095			Alpha/beta hydrolase related p...		Lus10040195 [exp]	10.4	0.8853
AT3G48860			unknown protein		Lus10016721 [exp]	10.5	0.8848
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	12.2	0.8938
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10033528 [exp]	12.2	0.8917
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	17.9	0.8727

Compare expression of checked genes

Lus10025267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.