Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015596 [exp] 106 / 1e-29 ND 41 / 2e-04 Lus10032852 [exp] 97 / 7e-25 AT3G09510 62 / 2e-10 Ribonuclease H-like superfamily protein (.1) Lus10027902 [exp] 80 / 4e-19 ND 38 / 0.003 Lus10034050 [exp] 77 / 2e-18 ND / Lus10013055 [exp] 74 / 5e-16 AT1G09080 332 / 8e-107 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10041342 [exp] 73 / 1e-15 AT5G65005 44 / 6e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10030004 [exp] 69 / 2e-15 ND / Lus10022333 [exp] 66 / 3e-13 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10000488 [exp] 62 / 2e-12 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00075 [flax] [poplar] RNase_H RNase H
Representative CDS sequence Show only first row Show all	>Lus10025268 pacid=23157339 polypeptide=Lus10025268 locus=Lus10025268.g ID=Lus10025268.BGIv1.0 annot-version=v1.0 ATGAGAGACCTGGACACTTGGACCAGCGCCTTCAGCCCGTCGGGCCCACCCACTCCTTTCCGATCCACTCCAAACCATCATGCTGACTGCCCACCGCCAA ATACTCCGCATAGGAGTATTCACTATGACGGATCGTATATTTGCGATTTCCAGAAGGCAGCTTATGGTGTCGTTGCCCGTGACATCCATGGTCATCCCTA TGACGATAAGAACATAACTTTCTTTTGTTCATCGGTGATTAATGCGGAAGCAAGAGCGATTCTTGAAGCCACTCACTTTGCCATAGCAAGTTCAGAGCCC ACAACCATTTATTCGGATTGCATCACCATCATCAATATCATCAACAGTCGAGCACTCGCGTGGCCTTGGGCTTGCTATGCTACCATTGGCTCGATCCTCC ACCTTCATGACAATGCACCGTGGATTAAATTTGCCTTCACTCCATGA
AA sequence Show only first row Show all	>Lus10025268 pacid=23157339 polypeptide=Lus10025268 locus=Lus10025268.g ID=Lus10025268.BGIv1.0 annot-version=v1.0 MRDLDTWTSAFSPSGPPTPFRSTPNHHADCPPPNTPHRSIHYDGSYICDFQKAAYGVVARDIHGHPYDDKNITFFCSSVINAEARAILEATHFAIASSEP TTIYSDCITIINIINSRALAWPWACYATIGSILHLHDNAPWIKFAFTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025268 [exp]	0	1
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	4.9	1.0000
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	5.0	1.0000
					Lus10011605 [exp]	5.5	1.0000
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	7.0	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	7.1	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	8.7	1.0000
AT2G24960			unknown protein		Lus10042715 [exp]	9.8	0.9619
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	10.1	0.9530
AT5G52390			PAR1 protein (.1)		Lus10018204 [exp]	12.1	0.9618
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10007678 [exp]	12.1	1.0000

Compare expression of checked genes

Lus10025268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.