Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50530 805 / 0 CRK CDPK-related kinase (.1.2) AT1G49580 802 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G19100 800 / 0 Protein kinase superfamily protein (.1) AT2G41140 750 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 735 / 0 Protein kinase superfamily protein (.1) AT2G46700 639 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT5G24430 622 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 605 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 462 / 7e-157 CPK16 calcium-dependent protein kinase 16 (.1) AT5G66210 450 / 5e-153 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002966 [exp] 818 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10008875 [exp] 640 / 0 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10009078 [exp] 607 / 0 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2) Lus10023234 [exp] 603 / 0 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10009342 [exp] 578 / 0 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10041914 [exp] 446 / 2e-150 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 442 / 3e-150 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10038460 [exp] 351 / 3e-114 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10000889 [exp] 347 / 7e-113 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143700 [exp] 880 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.005G135900 [exp] 823 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.009G105700 [exp] 820 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 808 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 766 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.006G040500 [exp] 715 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.002G176700 [exp] 679 / 0 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.014G103500 [exp] 667 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.012G023300 [exp] 649 / 0 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.007G057600 [exp] 431 / 4e-145 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025270 pacid=23157390 polypeptide=Lus10025270 locus=Lus10025270.g ID=Lus10025270.BGIv1.0 annot-version=v1.0 ATGGGTGCCTGCACTTCGAAGCCGCCTCCGAAGTCCAATCCCTACGCACCAAGAAACCAGCAGCCTCCCACCGAGCTCCAAACACCTGACCACCAACATT CCGACGATCAGCAACCGCCGCTTCCGAATTCGACTCCCTTCTTCCCTCTCTATACTCCCAGCCCTTCCCGCGCCGAAACGCCTACGCCGATGCGGATCTT CAAGTTCCATCCTCCTTCTCCGGCCAAGCACATTCGTGCTGTTCTCCGTAAGAGGAAGAGCGAAAAGAGTAAGAAGAAGGCGGCGAAGGCGGAGGGAGAC GTGAATGCGGAGGAGGAAGAAGAAGAAGGAGAAGGCGTGGCGTTGGACAGGAGATTTGGATTCTCCAAGGAGTTGACGAGTAAGCTTGAGGTCGGGGAAG AAGTAGGGCGGGGGCATTTTGGGTATACTTGTTCGGCTAGGTTTAGGAAAGGCGATCGGAAAGGGCAGCAAGTCGCCGTTAAAGTCATCCCTAAATCTAA GATGACAACGTCAATTGCAGTAGAGGATGTGAGAAGGGAGGTGAAGATACTTAAGGCCTTGGCTGGACATGGCAATTTAGTGCAGTTCTATGATGCATTT GAAGACTCTGACAATGTCTACATAGTCATGGAATTATGCACAGGAGGCGAGCTCCTGGATAGAATACTTTCAAGAGGTGGGAAATACCCAGAAGATGATG CTAAGGCAGTTATGGTGCAGATACTTAGTGTTGTAGCTTTCTGTCATCTGCAAGGTGTGGTGCACCGCGACCTTAAACCAGAGAACTTTCTCTATACTTC AAAGGAAGAGAACTCTCATCTGAAAGTGATAGACTTTGGCTTGTCAGATTATGTCAGACCAGATGAAAGGCTCAATGACATTGTAGGAAGCGCGTACTAC GTTGCACCAGAGGTTCTACACAGGTCTTATAGCACTGAGGCCGACGTATGGAGTATAGGTGTGATAGCTTATATTCTACTGTGTGGCAGTCGTCCATTTT GGGCTAGAACAGAGTCAGGGATCTTTCGAGCAGTCCTGAAAGCTAATCCGAATTTTAGCGAAGCATCTTGGACATCCATATCGCCAGAAGCTAAGGACTT TGTGAAACGTCTATTACACAAGGATCCCAGGAAACGAATGACTGCTGCTCAAGGATTAAGTCATCCTTGGCTGCGAAATATGACAGATGCGAATGTACTC CTTGATATCTCAATACTAAAACTAATGAGGGCGTATATACGATCTTCTCCCTTGCGTAAGACTGCTTTAAGGGCATTGGTGAAGACACTGTCTGTAGATG AGATATTTTATTTGAAGGAGCAATTCACAATATTACAGCCAAATAAAAATGGTAGCGTTACACTGGAGAACATTAGGATGGCCTTGATGAAAAACGCGAC AGAGGCAATGAGAGATTCTCGCATCCCTGATATTCTAGCTTCGGTATCTGTTCCGAACAGCACATTTGCCATTATCATTGACCTAAATACACTTCAACAC AAAAAGATGGAATTTGAAGAATTTTGCGCGGCTGCAGTAAGTGTTCACCAATTGGAAGCACTTGACGGATGGGAACAACATGCTCGTTCTGCATATGAAA TTTTCGACAAGGATGGAAACAGGGCTATCGTCATTCAGGAACTTGCCTCGGAGCTTGGGCTTGGTCCATCCATCCCGGTTCATGCCGTTCTAAATGACTG GATAAGACATAGTGATGGTAAACTAAGCTTCCATGGGTTCGTCAAACTGTTGCATGGTCTGTCTAGCCGAGCCATGACAAAGGCGCCATGA
AA sequence Show only first row Show all	>Lus10025270 pacid=23157390 polypeptide=Lus10025270 locus=Lus10025270.g ID=Lus10025270.BGIv1.0 annot-version=v1.0 MGACTSKPPPKSNPYAPRNQQPPTELQTPDHQHSDDQQPPLPNSTPFFPLYTPSPSRAETPTPMRIFKFHPPSPAKHIRAVLRKRKSEKSKKKAAKAEGD VNAEEEEEEGEGVALDRRFGFSKELTSKLEVGEEVGRGHFGYTCSARFRKGDRKGQQVAVKVIPKSKMTTSIAVEDVRREVKILKALAGHGNLVQFYDAF EDSDNVYIVMELCTGGELLDRILSRGGKYPEDDAKAVMVQILSVVAFCHLQGVVHRDLKPENFLYTSKEENSHLKVIDFGLSDYVRPDERLNDIVGSAYY VAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKANPNFSEASWTSISPEAKDFVKRLLHKDPRKRMTAAQGLSHPWLRNMTDANVL LDISILKLMRAYIRSSPLRKTALRALVKTLSVDEIFYLKEQFTILQPNKNGSVTLENIRMALMKNATEAMRDSRIPDILASVSVPNSTFAIIIDLNTLQH KKMEFEEFCAAAVSVHQLEALDGWEQHARSAYEIFDKDGNRAIVIQELASELGLGPSIPVHAVLNDWIRHSDGKLSFHGFVKLLHGLSSRAMTKAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10025270 [exp]	0	1
AT3G24240			Leucine-rich repeat receptor-l...		Lus10011756 [exp]	5.9	0.8636
AT3G01380			transferases;sulfuric ester hy...		Lus10039444 [exp]	15.2	0.8067
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10030377 [exp]	15.5	0.8318
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	16.2	0.8112
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10008710 [exp]	16.7	0.8452
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	24.4	0.7794
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10014783 [exp]	26.7	0.8184
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001019 [exp]	33.5	0.7824
AT5G59830			unknown protein		Lus10025307 [exp]	42.1	0.7826
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011883 [exp]	46.6	0.7979

Compare expression of checked genes

Lus10025270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.