Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19120 612 / 0 PIF / Ping-Pong family of plant transposases (.1) AT5G12010 117 / 3e-28 unknown protein AT4G29780 102 / 2e-23 unknown protein AT3G55350 91 / 2e-19 PIF / Ping-Pong family of plant transposases (.1) AT3G63270 86 / 3e-18 unknown protein AT1G72270 58 / 6e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011946 [exp] 110 / 5e-26 AT4G29780 634 / 0.0 unknown protein Lus10024997 [exp] 54 / 2e-08 AT5G12010 246 / 1e-80 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04827 [flax] [poplar] Plant_tran Plant transposon protein
Representative CDS sequence Show only first row Show all	>Lus10025271 pacid=23157346 polypeptide=Lus10025271 locus=Lus10025271.g ID=Lus10025271.BGIv1.0 annot-version=v1.0 ATGGACGATTCGTTCCTCCTAGTGCTCTCCAACCTCCTCCACCTCCACAACTCCTTAGACCCATCAACCACCTCTCTCCTCTCCTCTTCCTCCCCTTCCT CCTCCACCACTTCCTCTCCTTCTCCTTCCTCCACCCTCCCCGCCACCCCCTCCGCCGCACCTCTCCTCTTCTTCACCCTCGCCTCCCTCCTCTCCTTCCT CGCTTGCTCAAAACCAAAATCCAGAAAATCCAACTCAACCAACACCCCAATCCCGCCGGAAAACGCCGCCTACTCAATCCCGGCCTTCCGCGCGCTCTCC ACGGAACACATCTGGTCTTTAGAAGCCCCTCTTCGCGATGCACAATGGCGAGCTCTCTACGGCCTCTCCTACCAAACTTTCACCACTGTTGTCGAAAAGT TGAAGCCTTTCATTGCCGCGTCGAATCTCTCCCTGCCGGCGGATTACGCCGTTGCGATGGTTCTGTCCAGGCTGGCTCATGGGTACTCGGCAAAGACGCT TGCTTCACGGTACTCTCTCGAGCCTTACTTGATTTCCAAGATAACCAATATGGTTACTAGGTTGTTGGCTACTAAGCTATACCCGGAGTTCATTAAGATA CCGAATAATAGGCGTAGGTTGATTGAGACTACTCAGGCTTTTGAAGAGCTTACTGCTTTGCCTAACGTCTGTGGAGCTATCGATGGGACGCCGATAAAGA TCGGTTCTTCATCGAGTTTGAATTCCAATCTGTATCGTTGTAGGTTTGGGTACCCGTCTGTTCAGTTGCAGGTGGTTTCTGATCATAAGAAGGTGTTCTG GGATGTTTGTGTTAAGGCGCCCGGTGGGATCGATGATGCTACTCATTTTAGGGATAGTTTGTTGTACAATCGGCATATCTCCGGTGATGTTGTGTGGGAT AAGGTGATTAATGTGAAAAATCATCATGTGAGGCCTTATGTGGTTGGGGATTGGTGTTATCCATTGCTGTCCTTTCTGATGACTCCATTTTCGCCAAATG GGGCAGGCACTCCTGCACAGAATTTGTTTGATGGGATGCTGATGAAAGGGAGGTCTGTAGTTGTTGATGCCATAGGGCTTTTGAAAAGCAGGTGGAAGAT GTTGCAGGATATGAATGTAGGGTTGAACCATGCTCCCCAGACGATTGTTGCGTGTTGTGTCTTGCATAATTTGTGCCAGATGTATAGGGAGCCGGAGCCC GATATATGGAGGGAGCCTGATGAGACTGCTGCTCCTGCTAGGGTTCTTGAGAGCGAGAAGTCGTTTCATTATTTCGGTGATAGCTTGAGGCAGGCATTGG CTGATGATTTGCACCAGAGGCTCTCTTCCCGGTAG
AA sequence Show only first row Show all	>Lus10025271 pacid=23157346 polypeptide=Lus10025271 locus=Lus10025271.g ID=Lus10025271.BGIv1.0 annot-version=v1.0 MDDSFLLVLSNLLHLHNSLDPSTTSLLSSSSPSSSTTSSPSPSSTLPATPSAAPLLFFTLASLLSFLACSKPKSRKSNSTNTPIPPENAAYSIPAFRALS TEHIWSLEAPLRDAQWRALYGLSYQTFTTVVEKLKPFIAASNLSLPADYAVAMVLSRLAHGYSAKTLASRYSLEPYLISKITNMVTRLLATKLYPEFIKI PNNRRRLIETTQAFEELTALPNVCGAIDGTPIKIGSSSSLNSNLYRCRFGYPSVQLQVVSDHKKVFWDVCVKAPGGIDDATHFRDSLLYNRHISGDVVWD KVINVKNHHVRPYVVGDWCYPLLSFLMTPFSPNGAGTPAQNLFDGMLMKGRSVVVDAIGLLKSRWKMLQDMNVGLNHAPQTIVACCVLHNLCQMYREPEP DIWREPDETAAPARVLESEKSFHYFGDSLRQALADDLHQRLSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19120			PIF / Ping-Pong family of plan...		Lus10025271 [exp]	0	1
AT5G02850			hydroxyproline-rich glycoprote...		Lus10002749 [exp]	2.8	0.8604
AT3G49910			Translation protein SH3-like f...		Lus10011540 [exp]	4.7	0.8659
AT4G34880			Amidase family protein (.1)		Lus10027853 [exp]	5.2	0.8599
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	9.8	0.8534
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10037533 [exp]	12.0	0.8521
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	12.2	0.8515
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	12.5	0.8587
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	13.4	0.8495
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10024048 [exp]	13.9	0.8143
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	15.4	0.8531

Compare expression of checked genes

Lus10025271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.