Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009075 [exp] 112 / 1e-31 AT2G37300 68 / 9e-15 ATP-binding cassette I16, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082700 [exp] 52 / 3e-08 AT2G37300 71 / 1e-14 ATP-binding cassette I16, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025272 pacid=23157394 polypeptide=Lus10025272 locus=Lus10025272.g ID=Lus10025272.BGIv1.0 annot-version=v1.0 ATGTCAGCGAAAGAGAGCAAGAAGCTGAGTGGGGATGTAGTTGTTGGTTCGAGTTCTAGGACAGTTGAGTCACTTAGGGGGAGACTTCTTACTGAACGAC AAGCTTCCAGAGTGGCTAATGAAGAAGCTGAGCTGCTAGAAAACAAGCTGAAGGAACTGGAGAGGAAGCTCAAGGAAGAGACTAAACTAAGAGGGAAAGC TGAAAAGAAGCTGAAATTCCTGATGAGGAAGCTCCATTCTTTGAACATTACCTTCACATTGGATGTGAACTCATCTTCTTCTTCATCAGATACCTCTGGA TTGTTCTCTTCCACTGCATCATCTTCCATAACTACCACTACTTCTTTTTCTTCTTCTTCTTCAATTGCCAACAACACAGAAGAAACCGAGTCCCAATTCC AGGAACAGATCCCTGAGACAGAAACAAGAGCGGATTCAGCTCCACTTTTGCAGCATGCCAAGACTCCTCCTGCTGCTGCTGCTGCTGATGATGATGTTGA TCAAAGGCACTAA
AA sequence Show only first row Show all	>Lus10025272 pacid=23157394 polypeptide=Lus10025272 locus=Lus10025272.g ID=Lus10025272.BGIv1.0 annot-version=v1.0 MSAKESKKLSGDVVVGSSSRTVESLRGRLLTERQASRVANEEAELLENKLKELERKLKEETKLRGKAEKKLKFLMRKLHSLNITFTLDVNSSSSSSDTSG LFSSTASSSITTTTSFSSSSSIANNTEETESQFQEQIPETETRADSAPLLQHAKTPPAAAAADDDVDQRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	0	1
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10014222 [exp]	1.0	0.8989
AT2G33400			unknown protein		Lus10011782 [exp]	2.8	0.8906
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	4.0	0.8777
AT2G23140			RING/U-box superfamily protein...		Lus10024899 [exp]	4.5	0.8628
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	6.2	0.8811
AT3G55060			unknown protein		Lus10030304 [exp]	7.1	0.8734
AT2G33400			unknown protein		Lus10023739 [exp]	9.2	0.8441
AT5G62550			unknown protein		Lus10023614 [exp]	9.5	0.8571
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	10.4	0.8651
AT4G35160			O-methyltransferase family pro...		Lus10025098 [exp]	11.5	0.8731

Compare expression of checked genes

Lus10025272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.