Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37310 635 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 370 / 1e-118 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 341 / 3e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 334 / 2e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 332 / 1e-103 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22410 328 / 6e-103 SLO1 SLOW GROWTH 1 (.1) AT5G39350 327 / 1e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 327 / 1e-102 MEF22 mitochondrial editing factor 22 (.1) AT4G39530 326 / 9e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 321 / 5e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 380 / 3e-122 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 377 / 3e-121 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 338 / 9e-108 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 337 / 5e-107 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10008967 [exp] 338 / 5e-105 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 334 / 3e-104 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10033858 [exp] 325 / 1e-102 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 323 / 5e-102 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 328 / 2e-101 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216100 [exp] 738 / 0 AT2G37310 724 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 359 / 3e-114 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 354 / 3e-112 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 351 / 3e-110 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 338 / 9e-106 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 338 / 1e-105 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G217900 [exp] 334 / 1e-105 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.010G086200 [exp] 332 / 3e-104 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 334 / 6e-104 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 333 / 7e-104 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025273 pacid=23157344 polypeptide=Lus10025273 locus=Lus10025273.g ID=Lus10025273.BGIv1.0 annot-version=v1.0 ATGAGAAACCTGACTGATCGCTTCAAGGGCCGAACCCATCGTGGCTGTCGTTACCTTCAGACTCTCGCCGACGCCGGCATCGACTGTGCATTGTACGGCC GTCTCATCCAGCAGTTCACCAACCACCGTCTTCCTAATCAAGCGAAGCAACTCCACGCCCGGTTAAATCTCCTTTCAGTCGTCCCTGACAATTTCCTCGG TTCCAAGCTTGTTAATGTCTACGCCAAAACTGGAAATTTATCCTATGCCCGCCATGTGTTCGACAAAATTCCCCAGAAGAACACTTTCGCCTACAATGCG ATGCTCATCGCCTACTCCCTCAACGACCGCCATGGAGATGCTCTAACCCTCTTCACAGAGCTGGCCGTTTGGAACGAGCTCCAAGCTAGACCCAACAATT ATTCGATCACTTCTTTTTTGAAGTCGCTGGGAAGCTTGCCCTCTAGTGATGTCAAAGTTGGAAAGGAGGTTCATGGATATATTATAAGGAATGAGTTAGG CGGTGATGTCTTTGTTCGGAATGCTTTGATTAGTTACTATGCAAAATGTGTTGCAATCGTCCTAGCGAAGAAGGTGTTCGACGAAATGCCTCACAGAGAT GTGGTGACGTGGAACTCTATGATTGCAGGGTACTCTCAAGGAGCTTTTTATGAGAAGTGCAAAGAGTTGTACAGAGAGATGTTGGATTCGTCTGGGTTGA TGCCGAATGCTGTAACTGTAGTCAGTGTCCTTCAAGCGTGTGCCCAGTCATTCGATCTTGTTCTTGGAATGGAAGTTCATAGATTTTTTATCGATAATCA GATCCAAGTTGACAGGGAAGTTAATAATGCGTTTATTGCAATGTACTCCAAATGCGGTCTTTTAGAGTTTGCAAAGGAATTGTTTCTGGATACGAGTGAT AGAGATAATGTGACTTACGGTTCTATTATAACTGGATACATGTGTTATGGTCTAGTAGACGAAGCCATCGATATTTTTAGATCAGCAAAAAAATCCCTCG GGGTTAGCAGCTGGAATGCAGTGATTTCAGGTTTGGTACAGAACAATCGGTGCGCGCAGGTTATAGAATTGTTGAGAGAGATGGTAGCATCTGGTTTGAG GCCTAATCAGGTAACACTTTCAAGCATTCTTCCTGCTTTATCATATTTCTCTAATCTCAGAGGAGGGAAAGAGGTCCATTGTTATGCTGTCAAATATAGC TATGACAAGAACATATATGTTACAAGTGCAATCATCGATATCTACGGCAAGACGGGATATATTAACGGGGCGGAGATTGTTTTTCGTTTTTCGAAAGAAC AGAGCTTGGTTTTGTGGACTGCGTTAATCTCTGCACATTCATCACAGGGGGATGCTGATTCCACTCTTCTTCTCTTTTATGAGATGCTGGATAAAGGAAT TGAGCCTGATCCAGTTACATTTACAGCGGTATTATCAGCTTGTGCTCATAGTGGGATGGTGGAAAAATCTTGGGAGGTTTTCAACAGCATGTCAAGAGAA TTTGGTATTCAACCTTTGGTTGAGCAATATGCTTGCATGACGACTGTTCTATGCAGAGCCGGTAGGCTCACGGAAGCGACCGAGTTTGTTTCGAGCATGC CGATCAAACCGAGTCCACAAGTTTGGGGCGCGTTGCTTCATGGTGCTTCGGAATCTGGTGATGTTGAACTTGCGAAAATGGTATATGACCGTTTGTGTGT GGATGAACCGGAAAATAGTGGAAACTACACGATCATGTCGAATTTATATGCTCAGGCAGGGAGATGGAAAGAAGTGGATGAGGTGAGAGACAAGATGAGT GGTCTTGGGTTGAAGAAGATCCCTGGATGTAGCTCAGTAGGAACCGGAATAAGATTAAATTATGTGCCGAAGGTGGAAAGGGAAGCATTAAGACTTAAAA AGTTAGGACCCAATCAGGAGCTACCAACTGTAGGTTAG
AA sequence Show only first row Show all	>Lus10025273 pacid=23157344 polypeptide=Lus10025273 locus=Lus10025273.g ID=Lus10025273.BGIv1.0 annot-version=v1.0 MRNLTDRFKGRTHRGCRYLQTLADAGIDCALYGRLIQQFTNHRLPNQAKQLHARLNLLSVVPDNFLGSKLVNVYAKTGNLSYARHVFDKIPQKNTFAYNA MLIAYSLNDRHGDALTLFTELAVWNELQARPNNYSITSFLKSLGSLPSSDVKVGKEVHGYIIRNELGGDVFVRNALISYYAKCVAIVLAKKVFDEMPHRD VVTWNSMIAGYSQGAFYEKCKELYREMLDSSGLMPNAVTVVSVLQACAQSFDLVLGMEVHRFFIDNQIQVDREVNNAFIAMYSKCGLLEFAKELFLDTSD RDNVTYGSIITGYMCYGLVDEAIDIFRSAKKSLGVSSWNAVISGLVQNNRCAQVIELLREMVASGLRPNQVTLSSILPALSYFSNLRGGKEVHCYAVKYS YDKNIYVTSAIIDIYGKTGYINGAEIVFRFSKEQSLVLWTALISAHSSQGDADSTLLLFYEMLDKGIEPDPVTFTAVLSACAHSGMVEKSWEVFNSMSRE FGIQPLVEQYACMTTVLCRAGRLTEATEFVSSMPIKPSPQVWGALLHGASESGDVELAKMVYDRLCVDEPENSGNYTIMSNLYAQAGRWKEVDEVRDKMS GLGLKKIPGCSSVGTGIRLNYVPKVEREALRLKKLGPNQELPTVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	0	1
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	1.4	0.9209
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	2.0	0.9056
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	3.5	0.9147
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	4.2	0.9002
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	5.7	0.8976
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	7.0	0.9001
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	7.9	0.9066
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	9.3	0.8689
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	9.5	0.8771
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	10.1	0.8789

Compare expression of checked genes

Lus10025273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.