Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58090 115 / 5e-32 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G22760 42 / 0.0001 PHD finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009074 [exp] 204 / 1e-68 AT3G58090 97 / 8e-26 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10020532 [exp] 42 / 0.0001 AT5G22760 731 / 0.0 PHD finger family protein (.1) Lus10009383 [exp] 42 / 0.0001 AT5G22760 714 / 0.0 PHD finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216000 [exp] 142 / 9e-44 AT3G58090 131 / 4e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.004G189600 [exp] 45 / 1e-05 AT5G22760 879 / 0.0 PHD finger family protein (.1) Potri.001G254300 [exp] 40 / 0.0006 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025274 pacid=23157409 polypeptide=Lus10025274 locus=Lus10025274.g ID=Lus10025274.BGIv1.0 annot-version=v1.0 ATGGATAGCAAAGGCAAAAAAATTGAACTGGAAGAATCTTCACCAGTCTCCGTCTTCAAGCTACCAAGAGAGCCAGCTGTCGTCATCAATGGCGTCCCGG ATATCGTCCTCCTAAAGCATGAAGGCCTATCTCAGCCGAGATTTGCGGAACGTCCAGAATCATCGCAAGGAGAAGAAATTGTCGGAACTGAAGGTTTCGG CGAATGGTTGGAAGGGAGGCAAGTTAAGAAGTCGTTCGATGATAAATATTTCTCCGGTACTGTGACGCGGTACGACAAGGAAACAAAATGGTACAGGGTG GAGTACGAAGATGGCGATTTCGAAGATCTCTACTGGAAAGAGCTGGAGCCTGATCTCTTACCTCTGGATATTACGGTTCCGTTGAAGACTCTGGCGTTGA ACGTGGTGAGCAAAAGCCAGAAGGCCGTTCCTAAAGTTTGGAAAACTGTCACTGTAGCTAAAGTTAAAAGGACTAAAGGTATGGGAAAGCAAACTGCATG A
AA sequence Show only first row Show all	>Lus10025274 pacid=23157409 polypeptide=Lus10025274 locus=Lus10025274.g ID=Lus10025274.BGIv1.0 annot-version=v1.0 MDSKGKKIELEESSPVSVFKLPREPAVVINGVPDIVLLKHEGLSQPRFAERPESSQGEEIVGTEGFGEWLEGRQVKKSFDDKYFSGTVTRYDKETKWYRV EYEDGDFEDLYWKELEPDLLPLDITVPLKTLALNVVSKSQKAVPKVWKTVTVAKVKRTKGMGKQTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58090			Disease resistance-responsive ...		Lus10025274 [exp]	0	1
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10013777 [exp]	16.3	0.7301
AT5G04000			unknown protein		Lus10042034 [exp]	25.1	0.6940
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	25.4	0.6995
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004361 [exp]	32.8	0.6734
AT4G33380			unknown protein		Lus10006482 [exp]	46.7	0.6819
AT1G27350			Ribosome associated membrane p...		Lus10037031 [exp]	52.0	0.6635
AT1G22140			unknown protein		Lus10028077 [exp]	68.9	0.6379
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10040303 [exp]	114.9	0.5881
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10005043 [exp]	120.2	0.6233
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	172.9	0.5851

Compare expression of checked genes

Lus10025274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.