Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45850 935 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 904 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 613 / 0 ATP binding microtubule motor family protein (.1) AT2G36200 600 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19050 217 / 2e-57 POK2 phragmoplast orienting kinesin 2 (.1) AT2G22610 215 / 2e-57 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 212 / 4e-56 Di-glucose binding protein with Kinesin motor domain (.1.2) AT3G17360 211 / 1e-55 POK1 phragmoplast orienting kinesin 1 (.1) AT3G44050 209 / 5e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 206 / 1e-54 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009073 [exp] 1830 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 955 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 944 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 660 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 656 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10021340 [exp] 620 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 613 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 555 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027934 [exp] 221 / 1e-58 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082400 [exp] 1076 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 982 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 961 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 666 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G077800 [exp] 609 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 607 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 226 / 2e-60 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 224 / 8e-60 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.004G193700 [exp] 213 / 3e-56 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 212 / 5e-56 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10025275 pacid=23157449 polypeptide=Lus10025275 locus=Lus10025275.g ID=Lus10025275.BGIv1.0 annot-version=v1.0 ATGGATCATTCCCACTCTCAGCACCTACGGAGATCCACTATGGTCTCGGTTTCTCCTCCTTCTCACACCCCGCGGACAAGCCAGCGAGGGCTGAGAGACT CGGTTTCGTTGGATGGGAATTCGAGCAATAGTAAGAATGACAAAGGAGTCAATGTGCAGGTCCTTCTACGTTGTAGGCCGTTGAATCAGGATGAGAAGCA GCTGGTGTCACCTGCAGTGATTTCTTGTAATGAGAAGAAGGGAATAGTGACTTTGTTCCAGAACACAGCTCACAAACAGATAGATAAGAACTATCAATTT GACAAGGTGTTTGGCCCTACATGTGAGCAGAAGCTGCTGTTTGATTCAGCAGTGACTCCTATTGTCAATGAAGTTCTTGAGGGTTATAATTGTACCATTT TCGCTTATGGACAGACTGGAACGGGTAAAACTTACACAATGGAAGGAGGGATGGTGGCTGAGGATGGAGAGTTTCCAAGTGATGCAGGAATCATCCCACG AGCTGTTCAGCAGATATTTGAGGTTCTTGAGGCCAGAAGTGAAGACTATAGCATGAAAGTGACATTTCTAGAGCTTTACAATGAGGAGATAATGGACCTT CTGGACCCTGACGAAAGCCCTACTAGCTCAGATGATAAACCGAAGAAGCCAATAGCCCTGTTGGAAGATGGCAAGGGAGGCGTATTCATAAGAGGCTTGG AGCAGGAGTTGGTTTCTTCTGCAAAGGAAATATACAAGATCTTGGAGAAAGGCTCAGCAAGAAGACAAACCGCTGAAACCCTGCTTAACAAAACCAGCAG CCGTTCCCACACGATTTTCTCCATTACAATTTACATCAAGGAAGATGGTTCTTCAGTTGGCGAGGAGCTAGTGAAGTGTGGAAAACTTAATCTTGTTGAT CTTGCTGGTTCTGAGAATATATCACGTTCTGGAGCGAAAGAGGAACGAGCAAGGGAAGCAGGGGAGATCAATAAAAGCTTGCTAACGCTCGGCCGAGTGA TCAATGCATTAGTTGACCATTCTGGGCATGTTCCTTATAGGGACAGTAAATTGACGAGGTTATTGAGGGATTCACTAGGTGGGAAGACGAAGACTTGTAT AATTGCCACGATCTCTCCATCTGTGAACCAGAGGACAATAAAAGCTGAGCTGCTAAAGGATCTTTACGCTGAGATAGACCGCCTCAGGCAAGAATTACAT GCTGCAAGAGAGAAGAATGGAATTTATGTACCGGTTAACCGTTACCTGACTGATGAAGCTGAAAGGAAGGCACTTGCTGACAAAGTGGAGTTCATGCAAC TTGAATTAGATATCAAAGACAAGCAACTTGATAATCAGCAGCTTCAAATAACTGAACTAGGCGGGAAACTTCAGAAGACACAGAACGAACTCCAGGAAGC CCGCCATAACATGTTTGACATGGAGGTTAGACAAGGAGAAGCACTTGCAACAATACAGGAGAAAGATTACTTGATTTCTAATCTTCTTCAATCTGAGAAA GCACTTACTGAACAAGCTTTGACGCTGCGGGATGAGTTGGAGGGTGCAGCAAAAGAGGCATCAAATTTCTTTGAAAAAATCGAAGCACAGACCAAACTGG GAGAAGCAAACAGACTTCTTCTGCGCAACTATCAAAGTCAAGTGGCTCAAGAGCTTGAAACCTTGCACAGAGTTGTTACAAGTGCTGTGACAAAGCAGGA GCAGGAGCTGAAATCAATGGAAAAAGATCTTAGTTTATTCCTAGCCGATAAAGAAGGGGCTACTGACGGATTACTGTCACAAGTTGCAAGATCCAAGGAC AGCCATGACAGTAGCATCAAGACATTGGAAAATGTAGCTGGCGAGCTTGATGCCGGTTACCAGCTAGCATTTTCTGGTGTAACTTCGGAACTTGTAGAAG AGAAGTTCATGCAAATACAGGGCGTTCTTGAAGACATACAAACTGACTTGTCCAACGAGGATGAAAAGCTTGCTGAATATGCACAGCAGCAAAACGAAGC TCATTCCAAGACACTACAGATGGCCAAGACAATATCTGAAGCGATTATGAGTTTTACGGGGAAATTAGGCATGCACAGTTCGAATCTGTCCAGAATAGCA GAAGAGACCCAAATAACTACTGGGGAAAAGCTGTATGAACTTGAAAAGGAGTTTGAGTTAACTGCTGCTTTGGAGAAGGACCTCCTGCTGGAGAAAATTG CAGAGCTGTTGGATAGTTCAAATGCTCGGAAGAAAAAGCTGGTGCAAACATCGATTAGTAGCCTTCTGGAGAGCATGGCATCAGGGAACTGCAACTTACA GCTGGAGCTCTCGACCTTGGAAAATGTTGCTTCTTCTGTCCAGGGTGAATGGAGATCTCACATGCAAATAACAGAGGCTAATCACGTTGAAGCTGTCGGG TCTGTGAAAAACGGGAAAGTGGATTTGGAAGAACTCCTTCATCAATGCTTAACAAAAGCAAGCACAGGAGCCGTGAACTGCAAAGATGTATGTGAATCAG TTCTCAGTCAGCAAAAGAGAAGCTTAGATTCTGTTTTCACCATTGTCAGGGATGGAGTAGAAACCAACCAAGATATCTTCAAAAAGCTCAAATCTTTTTC CATTTCTACACTTCAAGAATCAGACTCTGCAAACCAGTCTCTTGTATCTGCCATTTCGAATCTACTGAATCTGGACCATGAAGTAGAAAAGAAGATGAAC ATGACCATTGCTCCTTCCATAAATTATATAAAGAAGCTCGACCGTGATCACCTAGACGGAGTACTCGAAATCAAGGACAATGCAAGGCAATGCCTAATTA GCGAATACAAGGTCGATGAAACTTGCATCTCACTCACCAAGGAAAAGTACAGCATACCAAGCAGTTCAGCTATTCAGGAACTCAGAACTCCAAACTTTGA AGTATTAGTAAGTTCCTTCTCTACAAATTCAGCAGCAGAACAAGAACTAGAATCAAAGACTTTGCCAGTGGCTCAAAGTTCCGATCAGAACAAGTGTTCT ACTCCTGAAGTACCCCTCGCATCCATCATGTGA
AA sequence Show only first row Show all	>Lus10025275 pacid=23157449 polypeptide=Lus10025275 locus=Lus10025275.g ID=Lus10025275.BGIv1.0 annot-version=v1.0 MDHSHSQHLRRSTMVSVSPPSHTPRTSQRGLRDSVSLDGNSSNSKNDKGVNVQVLLRCRPLNQDEKQLVSPAVISCNEKKGIVTLFQNTAHKQIDKNYQF DKVFGPTCEQKLLFDSAVTPIVNEVLEGYNCTIFAYGQTGTGKTYTMEGGMVAEDGEFPSDAGIIPRAVQQIFEVLEARSEDYSMKVTFLELYNEEIMDL LDPDESPTSSDDKPKKPIALLEDGKGGVFIRGLEQELVSSAKEIYKILEKGSARRQTAETLLNKTSSRSHTIFSITIYIKEDGSSVGEELVKCGKLNLVD LAGSENISRSGAKEERAREAGEINKSLLTLGRVINALVDHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATISPSVNQRTIKAELLKDLYAEIDRLRQELH AAREKNGIYVPVNRYLTDEAERKALADKVEFMQLELDIKDKQLDNQQLQITELGGKLQKTQNELQEARHNMFDMEVRQGEALATIQEKDYLISNLLQSEK ALTEQALTLRDELEGAAKEASNFFEKIEAQTKLGEANRLLLRNYQSQVAQELETLHRVVTSAVTKQEQELKSMEKDLSLFLADKEGATDGLLSQVARSKD SHDSSIKTLENVAGELDAGYQLAFSGVTSELVEEKFMQIQGVLEDIQTDLSNEDEKLAEYAQQQNEAHSKTLQMAKTISEAIMSFTGKLGMHSSNLSRIA EETQITTGEKLYELEKEFELTAALEKDLLLEKIAELLDSSNARKKKLVQTSISSLLESMASGNCNLQLELSTLENVASSVQGEWRSHMQITEANHVEAVG SVKNGKVDLEELLHQCLTKASTGAVNCKDVCESVLSQQKRSLDSVFTIVRDGVETNQDIFKKLKSFSISTLQESDSANQSLVSAISNLLNLDHEVEKKMN MTIAPSINYIKKLDRDHLDGVLEIKDNARQCLISEYKVDETCISLTKEKYSIPSSSAIQELRTPNFEVLVSSFSTNSAAEQELESKTLPVAQSSDQNKCS TPEVPLASIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45850			P-loop containing nucleoside t...		Lus10025275 [exp]	0	1
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	1.0	0.7766
					Lus10018645 [exp]	2.0	0.7518
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	16.4	0.7029
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10018152 [exp]	25.3	0.6859
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	27.8	0.6867
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	28.5	0.6751
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	34.9	0.6687
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	43.3	0.6762
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	54.5	0.7016
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	63.2	0.6922

Compare expression of checked genes

Lus10025275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.