Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37320 477 / 2e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 281 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 281 / 2e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 274 / 6e-84 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G27610 275 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 271 / 1e-82 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G13600 269 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04780 268 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G50270 266 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G56570 263 / 4e-81 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009070 [exp] 934 / 0 AT2G37320 515 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 287 / 1e-88 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 287 / 1e-85 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 286 / 3e-85 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 274 / 1e-84 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 279 / 5e-84 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019891 [exp] 269 / 4e-83 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 270 / 6e-83 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 275 / 8e-83 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082200 [exp] 595 / 0 AT2G37320 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 289 / 7e-90 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 293 / 2e-89 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 288 / 3e-89 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 283 / 9e-88 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 283 / 2e-87 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 286 / 3e-86 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 278 / 1e-84 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G018700 [exp] 278 / 2e-84 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G241100 [exp] 270 / 4e-84 AT5G04780 572 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025277 pacid=23157342 polypeptide=Lus10025277 locus=Lus10025277.g ID=Lus10025277.BGIv1.0 annot-version=v1.0 ATGGTTGTTGTTTCGCTTCGTAACACCGTCCATTACCTTCGAAGTCTGCAACACCATAGACCTTTCTCTTACTACAGAGTCACCGGCGAAAGACAGAGGA GGCGCGTAGACAAGGCACTCAGAATTCTAGACATCGTATCTACCGGCAGAAAAGATACCATTGTCAGAGGCGGAGGAAACCATCTCCGTATCATCGAGGA CTTCCTTCGACCAGATTTCGTTCAAAGCCACGAAAATTCCCCAATCCCTGAGGTTGAAACTGCCGCAGTCGAGAACGATGAAGAATTCGGAGTCTTCGGT GCAGTCGTCCTGTCAAATGCGGTGAGCTCATGCGTGTCAGTCTGCGATCTTCGCGGAGGGGTTCAGTATCATTGCTCGGCTGTAGCTACTGGATTCGTCG CAAATGCATACGTGGGGACTTCTCTGATCACATTGTACAATAAATGCGGTGCACTGAGTAATGCACGCAAGGTGTTTGACGAAATGCCGGTAAGGAATGT GGTGTCCTGGACGGCAATTATTTCCGCGTTTGCACAGGAATGGTACGTTGATTTGTGCTTGGAGCTCTACTCCGAGATGAGAAATTCTTCACTCGACCCT AACGATTTCACCTTCACGAGTCTATTGAGTGCTTGCTCCGGCAGTGGAGCTCTTGGGCAAGGGAGAAGTGCTCATTGCCAAGCTGTTCAAATGGGATTTG ATTCATATTTACACGTCGCCAATTCTCTAATCTCCATGTACTGCAAATGTGGTAGCCTTGAAGATGCTTTGTTTATATTCAAGGACATGGGTAGTAATAA CAAGAGAGATATCGTGTCATGGAACTCAATGATTGCAGGATATGCTCAACACGGTCTGGCAGGGGAAGCAATCGAGCTTTTCGAAGAAATGAAGAAACAA GGAAAGCCGAAACCGGATACCTTTACTTTCCTTGGTGTTCTATCTTCATGTCGTCATGCAGGTTTCGTTGAGAAGGGGAGGAAATATTTTAATTCAATGG AAGAATACAGTGTGATGCCGGAGGTAGACCATTATGCATGTCTGGTTGACCTACTTGGCCGCGCTGGGTTGCTGGAAGAGGCTCGGAGTGTCATTGAACT GATGCCGGTACCTGCAAATGCTGTTATATGGGGATCACTTCTTTCGTCGTGCCGAAATCATGGGAGTGGTCTTGTTGGGATACAAGCTGCAAAGCAAAAG CTGGCGATGGAACCGGAATGCGCTGCAACGCATCTGCAGCTGGCGAATTTGTATGCCGGCATGAATTGTTGGGGTGAGGCTGCTAGAGTGAGGAAACTGA TGAAAGATGGGGCGCTTAAGACTAATCCTGGGCATAGTTGGATTGAGATCAAGAACGTTGTGCAAAGATTCAGAGCAGAAGATGGGTCCAGCGCAAGGTT TGGTGAGCTGCTTGAGATGTTAGGTTGTCTAGCTACCAATATGAGAACACTGGGATTTGTGCCTGAGATATGA
AA sequence Show only first row Show all	>Lus10025277 pacid=23157342 polypeptide=Lus10025277 locus=Lus10025277.g ID=Lus10025277.BGIv1.0 annot-version=v1.0 MVVVSLRNTVHYLRSLQHHRPFSYYRVTGERQRRRVDKALRILDIVSTGRKDTIVRGGGNHLRIIEDFLRPDFVQSHENSPIPEVETAAVENDEEFGVFG AVVLSNAVSSCVSVCDLRGGVQYHCSAVATGFVANAYVGTSLITLYNKCGALSNARKVFDEMPVRNVVSWTAIISAFAQEWYVDLCLELYSEMRNSSLDP NDFTFTSLLSACSGSGALGQGRSAHCQAVQMGFDSYLHVANSLISMYCKCGSLEDALFIFKDMGSNNKRDIVSWNSMIAGYAQHGLAGEAIELFEEMKKQ GKPKPDTFTFLGVLSSCRHAGFVEKGRKYFNSMEEYSVMPEVDHYACLVDLLGRAGLLEEARSVIELMPVPANAVIWGSLLSSCRNHGSGLVGIQAAKQK LAMEPECAATHLQLANLYAGMNCWGEAARVRKLMKDGALKTNPGHSWIEIKNVVQRFRAEDGSSARFGELLEMLGCLATNMRTLGFVPEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10025277 [exp]	0	1
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10024222 [exp]	5.5	0.8083
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	8.5	0.7788
AT1G71060			Tetratricopeptide repeat (TPR)...		Lus10001633 [exp]	11.7	0.8078
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	15.7	0.7899
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	20.2	0.7815
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	20.3	0.8044
AT4G11630			Ribosomal protein L19 family p...		Lus10017958 [exp]	25.7	0.7897
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10016981 [exp]	25.9	0.7727
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	26.8	0.7906
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	28.6	0.7946

Compare expression of checked genes

Lus10025277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.