Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37340 173 / 2e-53 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 167 / 6e-51 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT1G09140 44 / 5e-05 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT3G42860 42 / 0.0004 zinc knuckle (CCHC-type) family protein (.1) AT1G60650 41 / 0.0004 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT4G36020 41 / 0.0004 CSDP1 cold shock domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003987 [exp] 241 / 5e-79 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10015039 [exp] 237 / 9e-78 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10041902 [exp] 43 / 0.0001 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10028449 [exp] 42 / 0.0002 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10009067 [exp] 0 / 1 AT3G53500 77 / 5e-24 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G215200 [exp] 249 / 1e-82 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.016G081700 [exp] 246 / 2e-81 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.005G112800 [exp] 46 / 6e-06 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G097500 [exp] 44 / 0.0001 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.007G057100 [exp] 43 / 0.0001 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10025280 pacid=23157416 polypeptide=Lus10025280 locus=Lus10025280.g ID=Lus10025280.BGIv1.0 annot-version=v1.0 ATGCCATGTCATCATGATGATATATGGCTGGAATTTAGCGACCCGCGGGATGCTGATGATGCAAGGTATCACTTGGATGGCAGAGAGGTCGATGGAAGTC GCCTCATTGTGGAAATAGCAAAAGGGGTACCTCGAGGCTCTCGAGAATATGTGGGCAGGGGTCCGGCTCCTGGATCTGGACGGTGTTTCAACTGCGGTAT CGATGGCCACTGGGCTCGCGATTGCAAAGCTGGCGATTGGAAGAATAAGTGCTACCGATGCGGGGAAAGGGGCCACATAGAGAGGAGCTGCAAGAACAGT CCCCAGAAACTGACGCGTGGGCGAAGTTACTCGAGGTCACCTTCTCCTCCTCGTCGCGGTGGCGGTGGTAGGAGCCGTAGTCCAAGTTACAGCCGAGGCC GTAGCTATAGCCGATCGAGGTCTCCAGCGCCCAAGAGAGAACGAAGTGTCGAGAATGATGCCAGGTCACTGAGCCCCGAACCAAAGAATGTATCTTCGAG GGGGAGGAAGCGCAGCCCGACTCCTGAAGATGGAAGCCCTCGTGCTTCTCCGAAAGTTAGGAAAACGGAGGATGAAGAGCGAGATTATAGTCCGAGTCCA AGGGGAAGGAGCAGGAGCAGGAGTCCTGAAGGAGAAAGCCCTCGAGCCGGAGGTAGGTATGAGAGTCCCGAGGCTAATGGCCGTGGTCATAGCCGTAGCC CCAGTCCGAGCAGGATAAAAAATGACAGGCCTGCTGCGGAAGATGATTATTCGGAAAACTGCCGATCGCCGAGAGGCAGCGAGTCCCCATGA
AA sequence Show only first row Show all	>Lus10025280 pacid=23157416 polypeptide=Lus10025280 locus=Lus10025280.g ID=Lus10025280.BGIv1.0 annot-version=v1.0 MPCHHDDIWLEFSDPRDADDARYHLDGREVDGSRLIVEIAKGVPRGSREYVGRGPAPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERSCKNS PQKLTRGRSYSRSPSPPRRGGGGRSRSPSYSRGRSYSRSRSPAPKRERSVENDARSLSPEPKNVSSRGRKRSPTPEDGSPRASPKVRKTEDEERDYSPSP RGRSRSRSPEGESPRAGGRYESPEANGRGHSRSPSPSRIKNDRPAAEDDYSENCRSPRGSESP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	0	1
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10042852 [exp]	4.2	0.8995
					Lus10040954 [exp]	4.2	0.9261
AT4G10970			unknown protein		Lus10023075 [exp]	5.2	0.9312
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	5.7	0.9289
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	7.4	0.9027
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	13.5	0.9111
AT3G56720			unknown protein		Lus10038984 [exp]	14.0	0.8807
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	16.5	0.9093
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	16.7	0.8882
AT5G57500			Galactosyltransferase family p...		Lus10000407 [exp]	16.8	0.8852

Compare expression of checked genes

Lus10025280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.