Plant FIBer expression Database

Lus10025282 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02640 123 / 2e-36 unknown protein
AT3G46300 66 / 4e-14 unknown protein
AT3G46310 62 / 5e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009066
[exp]
202 / 3e-67 AT5G02640 107 / 8e-30 unknown protein
Lus10038485
[exp]
76 / 6e-18 AT5G02640 73 / 9e-17 unknown protein
Lus10023327
[exp]
74 / 3e-17 AT5G02640 79 / 3e-19 unknown protein
Lus10037654
[exp]
46 / 9e-07 ND 41 / 2e-05
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G081600
[exp]
184 / 2e-60 AT5G02640 144 / 1e-44 unknown protein
Potri.006G215000
[exp]
176 / 3e-57 AT5G02640 144 / 1e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10025282 pacid=23157404 polypeptide=Lus10025282 locus=Lus10025282.g ID=Lus10025282.BGIv1.0 annot-version=v1.0
ATGGCGTCAGTATGCATCCAGAACTGCGTGAACGACACGCGAGACCCGCGGGTTCCGGTTCGGACCACCTACGTTAGCCTCCACAAGTGGACCGAGTCCG
TGGACGCGGAGCTGATAAAGTCGGTCCGCCGCGTGGGGCAAGGGATTCGGCAGCCGAGAGTGGTGGACAGTATCTCCTGCAGGCAGATGTATCTTAGGAG
CTACACTTTCTCAAGAAAGGAGACCGTGCCGGAGAAGACCAGGAAGTGCTTCGGCAAAGTCAAGGACAAGGTTTCGTCATGCGGTGGCGGCGGCAGCAAT
CAATCGTCTCGAGGAAATAAGAAGAAGAAGAAGAAGAAGAAGAAAAATGACGGCGGCGGGAGGAAGTGTATGGTGCTGAGGAAAGTAAAGGAGATGTCAT
GCGGGGCATTGTACAAGATTTTCCACAGGTTGTTGTCTTGTGCTACTAGCGTAGATGTTGTCGACCCTAAACTTTAA
AA sequence
>Lus10025282 pacid=23157404 polypeptide=Lus10025282 locus=Lus10025282.g ID=Lus10025282.BGIv1.0 annot-version=v1.0
MASVCIQNCVNDTRDPRVPVRTTYVSLHKWTESVDAELIKSVRRVGQGIRQPRVVDSISCRQMYLRSYTFSRKETVPEKTRKCFGKVKDKVSSCGGGGSN
QSSRGNKKKKKKKKKNDGGGRKCMVLRKVKEMSCGALYKIFHRLLSCATSVDVVDPKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02640 unknown protein Lus10025282
[exp]
0 1
AT2G28410 unknown protein Lus10022579
[exp]
1.0 0.9756
AT4G11950 Protein of unknown function (D... Lus10014138
[exp]
1.4 0.9708
AT2G28315 Nucleotide/sugar transporter f... Lus10021464
[exp]
3.5 0.9692
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Lus10019122
[exp]
5.3 0.9672
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Lus10036115
[exp]
6.3 0.9618
AT2G02820 MYB ATMYB88 myb domain protein 88 (.1.2) Lus10037202
[exp]
6.5 0.9557
AT5G02640 unknown protein Lus10009066
[exp]
7.1 0.9534
AT5G40020 Pathogenesis-related thaumatin... Lus10008304
[exp]
7.7 0.9551
AT4G09990 Protein of unknown function (D... Lus10005822
[exp]
7.7 0.9660
AT1G67510 Leucine-rich repeat protein ki... Lus10037006
[exp]
8.5 0.9659

Lus10025282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.