Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18520 591 / 0 Lung seven transmembrane receptor family protein (.1) AT3G09570 575 / 0 Lung seven transmembrane receptor family protein (.1) AT5G02630 460 / 3e-160 Lung seven transmembrane receptor family protein (.1) AT5G42090 391 / 4e-133 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009065 [exp] 674 / 0 AT5G18520 626 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10008267 [exp] 380 / 1e-128 AT5G42090 690 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10000821 [exp] 357 / 1e-119 AT5G18520 409 / 6e-140 Lung seven transmembrane receptor family protein (.1) Lus10033235 [exp] 328 / 2e-110 AT5G42090 520 / 0.0 Lung seven transmembrane receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G081300 [exp] 618 / 0 AT5G18520 609 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G214900 [exp] 610 / 0 AT5G18520 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.013G049500 [exp] 386 / 5e-131 AT5G18520 430 / 2e-148 Lung seven transmembrane receptor family protein (.1) Potri.003G147700 [exp] 377 / 1e-127 AT5G42090 639 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G083100 [exp] 376 / 3e-127 AT5G42090 642 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G166500 [exp] 43 / 0.0003 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10025283 pacid=23157335 polypeptide=Lus10025283 locus=Lus10025283.g ID=Lus10025283.BGIv1.0 annot-version=v1.0 ATGTCCACTTCCTTCTCCAAATCCTATCCTCCTCCTCCGCAGATCTGCTCCGCCACCGCGCCAAAAATGACGAAGACGCCGGCGATTCGGCTCTCTCTCC TCGCCTTGGTCGTTTCCTTCTTCGCCGTCGCCACGGCGGAGATCAGAACCCTGACCATATCCAACGACCCTCGGCCGATGATTCTCTTCGAGAAGTTTGG ATTCACCCACACCGGCCACGTCACGATCGCCGTCTCCAGCGTCTCCGTCGCCTCCTCCATCAACGCTCCCAATCCGGACGCTTCAGGTTTGGGCTTCTTC CTCCTCTCCGAGGAGTCTCTATTGCAGGTCCTCCTCGAGATCCAGCAAAACCCTAATTTCTGCGTCCTCGGATTCAAGTACGTCCTCAATCTCTTCAGCT TCCGCGACCTATCCCCTCCGCCTCTCTCTTCGTTCAATCAGTCGTATCCTATTCCGCATCCGAATGAGTATTCGCTCTTCTTCGCCAACTGTGCCCCGGA GACCAAGGTCTCCATGAAGGTCCGGACTGAGGTTTATAACGTAGATCGGGATGGCTCCAAGGATTTCTTGTCCGCTGGACAGACACAATTGCCTTCTCTT TACTCCGTCTACTCCATCGCCTATCTAGCCTTTGGTGTTTTCTGGATCTATATATGCGTCACCAACAAAAGATCTGTGCAATCGATCCATTTGCTGATGG CTGGATTGCTTCTGATGAAAGCTCTCAACTTGATCTGTGCTGCTGAGGACAAGCATTACGTAAAGGTTACCGGGACGCCCCATGGCTGGGACGTATTGTT CTATTTCTTCCAGTTTCTTCGTGTTGTGCTGCTATTCACTGTGATTGTATTGGTTGGCACTGGGTGGTCGTTTTTGAAGCCGTTTTTGCAAGAGAAGGAG AAGAAGGTATTGATGATTGTCATTCCTCTACAAGTATTAGCAAATGTGGCGTCCGTTGTGATTGGCGAGACAGGGCCATTTATCAGAGATTGGGTAACCT GGAATCAAGTGTTCTTGTTGGTTGATATAATCTGCTGCTGTGCCATTATATTCCCAATTGTATGGTCGATTCGTTCGTTGAGGGAAACCTCAAAGACAGA CGGCAAAGCAGCAAGGAATTTGGCTAAATTGCAGTTGTTTAGGCAGTTTTACATCCTTGTTATTGGGTATTTGTACTTCACAAGAATCGTGGTGTTTGCC CTGAAGACGATTGCAGCTTATAAGTACCAATGGGTGAGTAACGCTGCAGAAGAGACAGCAAGCTTGCTGTTTTATGCAGTCATGTTCTATATGTTTAGGC CGTTGGAGAAGAACGAGTACTTTGTGATTGATGAAGAAGAAGAGGAGGCGGCTGAAATGGCTCTGAAAGACGAAGAATTCGAGCTTTAA
AA sequence Show only first row Show all	>Lus10025283 pacid=23157335 polypeptide=Lus10025283 locus=Lus10025283.g ID=Lus10025283.BGIv1.0 annot-version=v1.0 MSTSFSKSYPPPPQICSATAPKMTKTPAIRLSLLALVVSFFAVATAEIRTLTISNDPRPMILFEKFGFTHTGHVTIAVSSVSVASSINAPNPDASGLGFF LLSEESLLQVLLEIQQNPNFCVLGFKYVLNLFSFRDLSPPPLSSFNQSYPIPHPNEYSLFFANCAPETKVSMKVRTEVYNVDRDGSKDFLSAGQTQLPSL YSVYSIAYLAFGVFWIYICVTNKRSVQSIHLLMAGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYFFQFLRVVLLFTVIVLVGTGWSFLKPFLQEKE KKVLMIVIPLQVLANVASVVIGETGPFIRDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLQLFRQFYILVIGYLYFTRIVVFA LKTIAAYKYQWVSNAAEETASLLFYAVMFYMFRPLEKNEYFVIDEEEEEAAEMALKDEEFEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	0	1
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	1.4	0.9391
AT3G03210			unknown protein		Lus10031359 [exp]	3.7	0.9333
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	5.1	0.9374
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031248 [exp]	6.0	0.9373
AT5G56350			Pyruvate kinase family protein...		Lus10010329 [exp]	6.1	0.9062
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	7.3	0.9161
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	8.0	0.9213
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	10.0	0.9115
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	10.8	0.9243
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	11.0	0.9299

Compare expression of checked genes

Lus10025283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.