Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09560 877 / 0 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) AT5G42870 457 / 6e-147 ATPAH2 phosphatidic acid phosphohydrolase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009064 [exp] 1566 / 0 AT3G09560 894 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Lus10021733 [exp] 365 / 2e-111 AT5G42870 432 / 5e-136 phosphatidic acid phosphohydrolase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G081000 [exp] 1017 / 0 AT3G09560 870 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Potri.006G214800 [exp] 996 / 0 AT3G09560 845 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Potri.014G031000 [exp] 399 / 2e-123 AT5G42870 468 / 1e-148 phosphatidic acid phosphohydrolase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04571 [flax] [poplar] Lipin_N lipin, N-terminal conserved region CL0137 [flax] [poplar] HAD PF08235 [flax] [poplar] LNS2 LNS2 (Lipin/Ned1/Smp2)
Representative CDS sequence Show only first row Show all	>Lus10025284 pacid=23157380 polypeptide=Lus10025284 locus=Lus10025284.g ID=Lus10025284.BGIv1.0 annot-version=v1.0 ATGAGTTTGGTTGGCAGGGTTGGGAGCCTTATTTCGCAAGGCGTTTACTCTGTTGCCACTCCTTTCCACCCCTTTGGTGGAGCTGTTGATGTGATTGTGG TTCAGCAACAGGACGGGACGTTTCGGAGCAATCCTTGGTACGTTCGATTCGGTAAGTTTCAGGGTGTTCTTAAAGGGGCTGAGAAGATAGTGCGTATTGA AGTCAATGGCACTGAAGCTAATTTCCACATGTATCTTGACAATTCTGGTGAGGCTTACTTCATACATGATTGTGGTAAAGTAGGAGAGAAGAGTAGTGAC GAAAAAGACAGTGATTGTTTGAAATTGCCCCAAGAGGGGTCAATATGTAAACTTGAACATAGTGTTTCTGATTCTGGTGTGGCACGGTTGCGAGAGGAAC AAGATTTAGTACGTAGCCGACTTGATAGGACGGAGTCTGATGTTGACCGGAGGTATTACGACTTCCCAGACGATCCATCTTCGCCGGTTTCCTTATCAGA ATTTGGTTCCAGTAGATACGACGAATCTCAGGGTTCAGATTCAGAAGTTATTCTGGTGAGTGTGGATGGACATATATTAACTGCGCCTGTTTCGGTATCA GAAGAGGTTGCTGAGAGTGTGCAGCTGAGCACACCTCAATTTCACTTAGGCCCTGGCGAAGGGACTGAAGAATTCAATTCAGGGGATAGTGCGTGGGCAG CTAAATATATTAGTAAGCTGAAGGAATCTCCTTCAGATGCTATATCTGATAAGTCTTGTAGTGGTAGTAATGATGAGATTTCTTCCCAACACCGACTGGA GGTATGTGAAGGTCAAGAGGAATGCAGCTGTCGAATTCAAGAGACTCGGGATATCGCTAGACTGGAAGAAGAGATTCCGATTCAAAGTGATTCGGAGGAT GCATCTGCTAGGAGTAGGAAGGGGGAAGTTTTTGGAAGCTGCTTGGCCTTAACAGAATTGGGTGGACGTGTTGGAAAAGTTACTTCTGAAATTGTAAATT CTTCAGTGGAAGTTGAAATAACGGTAGAAGAGCCTCCTCACACTCCTTTAGCGTCTAAGGTTCACGATGGATCAAGTGATGATTGTTTTTCTGCTCAGAA TTCTGATTCTGCCAGACTTGATGGATCACCTTCATCACAAGTTGAAATTGAAGCTACCGAGACCAGTGTTGTAGAGACTCAAGATGTAGATTTGGACACC TTGTCTAATCATTCAATCAATCAAGAACCAAAAGATGAAGAGTTAAATGCATCCACAGTGAAGGAAGAGCCAATTGATATAGAAGGGCACGCCTCTGAAG ATCATGACCCTACAAGCGAGGCAGTGCAAGATAATATAGAAACTTTTCCTGAGGAGTTGCCAAATGCTAACATAAGAATTGAACTCTCTGTCTGTGGGAA GGAACTTCAAGCTGGCATGGGCTTGGATGCTGCTGCCAGAGTCTTTGAAGCACACCGTGTATCTGTGGAGGAGTATAAAAGTTCTGCAACATCGATTGTA AAGAGTGAACATTTAATTGTGAGGTGTGATGGAAAGTACTTGCCATGGGAAAAGGCTGCCCCAGTTGTCCTTGGGATGGCTGCATATGATATAGATCTTC CTTTTGATCCGAAGGATGCAATTCCTGTCATACGGAGTGACACAGAGACAAGAGATGATGAAAGTGGGTTGCCTACCACACCCTCTAGCCGCAGGTGGAG GCTCTGGCCTAATCCATTTAGAAGGGTTAAAACACTTGAGCACACCAGCAGTACCTCATCAAGTGAAGAGTTATTTGTTGATACTGAATCAGGAAATTTG AACTCAATTGCAGAGCTGCCTGCTGCTTCCCCTGTCCCTGTCGAGTCTCCCCACAAGCAGTATGTGAGGACCAACGTTCCGACTACCGAGCAGATAGCAT CATTGAATCTAAAAGATGGTCAGAACTTGATAAAATTTAGTTTCTCCACCAGAGTTCTGGGCACTCAACAGGTTGATGCTCACATATACTTGTGGAAGTG GAATGCTAGAATTGTGATCTCAGATGTTGATGGAACAATTACCAAGTCTGATGTCTTAGGTCAGTTCATGCCTTTGGTCGGAAAGGATTGGTCACAATCT GGAGTGGCTACGCTTTTTTCTGCAATAAAGGAAAATGGATACCAGCTACTGTTTCTAAGTGCACGGGCAATTGTCCAGGCGTATTTGACCAGGAGTTTCC TCTTCAACTTAAAACAGGATGGGAAAACCCTACCGACTGGGCCAGTTGTTATTTCACCAGATGGATTGTTTCCATCATTATATCGCGAAGTCATAAGGCG AGCTCCTCATGAGTTCAAGATAGCTTGCTTAGAGGACATCAGAAAACTGTTTCCTGCCGAATACAACCCGTTCTACGCAGGCTTCGGTAACCGAGACACC GACGAGCTTAGTTACCGCAAAATCGGCATTCCAAAGGGGAAGATCTTCATCATAAACCCAAAGGGAGAGGTGGCTATCAGTCATCGTATCGACGTGAAGT CGTATACTTCTTTGCACACACTAGTGAACGACATGTTCCCCCCGACATCACTGGTCGAGCAGGAAGATTACAACTCGTGGAATTTCTGGAGAATGCCACT GCCAGATGTCGATTTGTAG
AA sequence Show only first row Show all	>Lus10025284 pacid=23157380 polypeptide=Lus10025284 locus=Lus10025284.g ID=Lus10025284.BGIv1.0 annot-version=v1.0 MSLVGRVGSLISQGVYSVATPFHPFGGAVDVIVVQQQDGTFRSNPWYVRFGKFQGVLKGAEKIVRIEVNGTEANFHMYLDNSGEAYFIHDCGKVGEKSSD EKDSDCLKLPQEGSICKLEHSVSDSGVARLREEQDLVRSRLDRTESDVDRRYYDFPDDPSSPVSLSEFGSSRYDESQGSDSEVILVSVDGHILTAPVSVS EEVAESVQLSTPQFHLGPGEGTEEFNSGDSAWAAKYISKLKESPSDAISDKSCSGSNDEISSQHRLEVCEGQEECSCRIQETRDIARLEEEIPIQSDSED ASARSRKGEVFGSCLALTELGGRVGKVTSEIVNSSVEVEITVEEPPHTPLASKVHDGSSDDCFSAQNSDSARLDGSPSSQVEIEATETSVVETQDVDLDT LSNHSINQEPKDEELNASTVKEEPIDIEGHASEDHDPTSEAVQDNIETFPEELPNANIRIELSVCGKELQAGMGLDAAARVFEAHRVSVEEYKSSATSIV KSEHLIVRCDGKYLPWEKAAPVVLGMAAYDIDLPFDPKDAIPVIRSDTETRDDESGLPTTPSSRRWRLWPNPFRRVKTLEHTSSTSSSEELFVDTESGNL NSIAELPAASPVPVESPHKQYVRTNVPTTEQIASLNLKDGQNLIKFSFSTRVLGTQQVDAHIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGKDWSQS GVATLFSAIKENGYQLLFLSARAIVQAYLTRSFLFNLKQDGKTLPTGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIRKLFPAEYNPFYAGFGNRDT DELSYRKIGIPKGKIFIINPKGEVAISHRIDVKSYTSLHTLVNDMFPPTSLVEQEDYNSWNFWRMPLPDVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10025284 [exp]	0	1
AT5G24430			Calcium-dependent protein kina...		Lus10008875 [exp]	2.8	0.8918
AT1G67890			PAS domain-containing protein ...		Lus10016912 [exp]	10.6	0.8821
AT2G30530			unknown protein		Lus10019115 [exp]	11.6	0.8722
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	13.6	0.8667
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10014907 [exp]	14.6	0.8373
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018241 [exp]	17.0	0.8839
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	18.2	0.8594
AT5G58720			smr (Small MutS Related) domai...		Lus10018236 [exp]	23.5	0.8448
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	24.4	0.8876
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	27.8	0.8563

Compare expression of checked genes

Lus10025284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.