Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37370 500 / 8e-170 unknown protein AT5G13560 463 / 3e-155 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009063 [exp] 775 / 0 AT2G37370 241 / 4e-72 unknown protein Lus10040337 [exp] 498 / 3e-168 AT5G13560 791 / 0.0 unknown protein Lus10023462 [exp] 479 / 4e-161 AT5G13560 795 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080900 [exp] 631 / 0 AT2G37370 676 / 0.0 unknown protein Potri.008G048100 [exp] 497 / 2e-168 AT5G13560 668 / 0.0 unknown protein Potri.010G212900 [exp] 474 / 2e-159 AT5G13560 749 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025285 pacid=23157332 polypeptide=Lus10025285 locus=Lus10025285.g ID=Lus10025285.BGIv1.0 annot-version=v1.0 ATGTCGTGGTTTAGGTCTGCAGTCAATCGAGCTGTCATCGCCGGAGGTCAAAAGGTCGGAGGAGGTATACGCACCGTCGCTGGAACCGCTGGAACCGTTG TCGTTCAAGCTGGCAATGCCGTCGCTGGGGGCGCCAAGATCATCCAGGATCGAATTGGGTCCCGGAATTTGCAAAACTTCCGGCAGACGGCGGAAAGGCT GGAGGAAGTTGCTATTTCGTACAGAGGAATCGAAAGAGTTCAATTGATGAGGAGATGGTTGGTTGCGCTTAAGGAAATCGAGAGACTATCTGCTCCTTTT ACGGCAAACGACACATTTCCTGAGGCAAACCTTCTCCCCGACGATCCCAAGGATTCTCCTAAAAGGCCTACAATGATACATTACTTCGATCCTGATCTCG GGACAATGAATTTCCGTGATGTGTTTCTTTATAGTCAGGCCCTTGAAGGCATCTCATTGTCCATGGTTACTGAGCCCTGGTTGTTTCTCATGTTGCTATG CGTGTATCTTGTTCCAATTCTTGAAGCACCAATGGAGGAGGAAGTCTCAATGCTTCTGGAGATTTTTGGGCTTTGTCTTGCAGGAGGGAAGGATGTTCAT CAAACAATCATTGAAAGCATAAAGACTTTGGCAAAAGCATTCTCTACTTACCGGGATGAAGTGCTGGTGAAGCGAGGAGAACTGCTCCAATTTGCTAAAG ATGCAATTTCTGGGTTGAAAATAAATTCCGACCTTGCAAGTTTATATGTAACAACCGTAAAAATGGAAAGGAAATTGCCGGATTTAAAAGATACTCTCAA AAGAATTCAGCTCTGTTCCACATTAGAGGCGCTACTAGTAAAGAAGAGATCTTTGAGAAATGGCTACTGCGCACAGGCGCATGCTGAGAAGGTGGACAAA TTAAAAATCTTGGCAGAATCTCTTCTTAGCTGTACTTCAAAAACTGAAAGCCGCATTGTAGATCACAGGTGTCAGAAAGAAGAAGCGCTCAACTTTCGAG TAGCTAAAACCAATGAGGTTAGCCAGATTGAGAAGGACCTAGCTGTAGAAATTAAAGCACTAGAGAAGGAAAAGCATGAACTTGAATCACAGTTGAAAAA GGTGAACAGCGCCTTAACTTCAGCTCGCCAACGGATTCACAATGCCAAGGAAGAAAGAGAAAACTTTGATGAAGCTAGTAACCAGATTCTGATGCACTTG AAAAGCCGGGAAGATGAGCTGTCTAAATCTATCAACTCTTGTAAAGTGGAAGCTGAAGTTGTTACTTCGTGGATTCAATTTTTACAAGATACATGGGTTC TCCAAAGTCGATACTCTGAGCAAAATGAGAAGCAGGTTAATGGCGACTTGGAGAAATACGGAGATTATCTGGTGAATCTTGTCATTCATCTTCTCACTGC GTACAAGGAACAGTTGGAACCGGATGTGATCCGTTTTAGAGGACTTGTGGAGGAGTTGCATTTGTGTCATGGGTCAGACGTAGCAGCTTCCCCCAATGTT GATAACCCGAAACGAACAAACAAACCAAAGGGTCTCGAAGACGAATACCTCGAATCTGAAGCCAAGATTATAACCATCTTGAGCATCGTGGATACCGTGA AAAAACAGTTCCATTCCAAACACGAATGCATTTACAGGAGAGACATAGATAAGACCGATGGATTATTCGAAGCAGTCGGGAAGATCAAAGAGGAATTCGA GTCGATCCCACGACCCACTCTGGAACGAAGAGTATCGTCGTCACCGAGTGCAAGATCATTATCACCTTATGGCGGCAGGTCTCAGGACGCCATAGCACCT CAGACACCGAGACAGTCGGTTGATACACCGGAAAGGAAAGAAGTGAAGAGGAACGGCAATGGCTTGCCTTTCGTCAACGTGAGAGGTCGAAAAGCCAGAG ACCCGCTCTTGCAAATCGAGCTAGAACTCGAATCGGATGGCAGAGCAACTCGCCTGTAG
AA sequence Show only first row Show all	>Lus10025285 pacid=23157332 polypeptide=Lus10025285 locus=Lus10025285.g ID=Lus10025285.BGIv1.0 annot-version=v1.0 MSWFRSAVNRAVIAGGQKVGGGIRTVAGTAGTVVVQAGNAVAGGAKIIQDRIGSRNLQNFRQTAERLEEVAISYRGIERVQLMRRWLVALKEIERLSAPF TANDTFPEANLLPDDPKDSPKRPTMIHYFDPDLGTMNFRDVFLYSQALEGISLSMVTEPWLFLMLLCVYLVPILEAPMEEEVSMLLEIFGLCLAGGKDVH QTIIESIKTLAKAFSTYRDEVLVKRGELLQFAKDAISGLKINSDLASLYVTTVKMERKLPDLKDTLKRIQLCSTLEALLVKKRSLRNGYCAQAHAEKVDK LKILAESLLSCTSKTESRIVDHRCQKEEALNFRVAKTNEVSQIEKDLAVEIKALEKEKHELESQLKKVNSALTSARQRIHNAKEERENFDEASNQILMHL KSREDELSKSINSCKVEAEVVTSWIQFLQDTWVLQSRYSEQNEKQVNGDLEKYGDYLVNLVIHLLTAYKEQLEPDVIRFRGLVEELHLCHGSDVAASPNV DNPKRTNKPKGLEDEYLESEAKIITILSIVDTVKKQFHSKHECIYRRDIDKTDGLFEAVGKIKEEFESIPRPTLERRVSSSPSARSLSPYGGRSQDAIAP QTPRQSVDTPERKEVKRNGNGLPFVNVRGRKARDPLLQIELELESDGRATRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37370			unknown protein		Lus10025285 [exp]	0	1
					Lus10002304 [exp]	1.7	0.9255
AT5G40900			Nucleotide-diphospho-sugar tra...		Lus10032050 [exp]	4.5	0.8970
AT2G37370			unknown protein		Lus10009063 [exp]	5.1	0.8978
					Lus10027520 [exp]	6.3	0.8121
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10025006 [exp]	6.3	0.8972
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	8.3	0.8974
					Lus10030256 [exp]	11.7	0.8029
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	13.0	0.8922
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	13.2	0.8702
AT4G10160			RING/U-box superfamily protein...		Lus10016924 [exp]	13.9	0.8535

Compare expression of checked genes

Lus10025285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.