Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07710 354 / 3e-119 Ankyrin repeat family protein (.1) AT5G60070 331 / 3e-110 ankyrin repeat family protein (.1) AT5G02620 330 / 5e-110 ATANK1, ANK1 ankyrin-like1 (.1) AT2G31820 273 / 1e-86 Ankyrin repeat family protein (.1) AT1G05640 270 / 9e-86 Ankyrin repeat family protein (.1) AT2G01680 193 / 3e-57 Ankyrin repeat family protein (.1) AT3G12360 189 / 4e-55 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 167 / 5e-47 Ankyrin repeat family protein (.1) AT1G10340 64 / 5e-11 Ankyrin repeat family protein (.1.2) AT5G54710 63 / 1e-10 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024440 [exp] 563 / 0 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 487 / 1e-171 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 350 / 2e-117 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 348 / 7e-117 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 279 / 1e-91 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 282 / 4e-90 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 196 / 8e-58 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 194 / 2e-57 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10034579 [exp] 191 / 5e-56 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214600 [exp] 429 / 2e-148 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 427 / 5e-148 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 363 / 7e-123 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 357 / 1e-120 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 342 / 9e-115 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 274 / 3e-87 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 275 / 5e-87 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 201 / 4e-60 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 200 / 6e-60 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 193 / 1e-56 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025287 pacid=23157312 polypeptide=Lus10025287 locus=Lus10025287.g ID=Lus10025287.BGIv1.0 annot-version=v1.0 ATGGCGGTTAAAGGGCAAAACGTTGACCTCGTTGACGAACTAGTAATGTCCGATCCTAGTTTGATCAACATGGTCGACAACAAGGGCAACATCGCCTTGC ACATCGCAGCCCGCAAGGGCCGGACTCAGATTGTGAGGAAGTTGCTAGACAATCAAGGACTTGAAAAAGTTACATTAAATCGGTCCGGGGAGACCGCGTT CGATACTGCTGCCAAGTCAGGGCATAACGACATTACATCTATGTTGGAGAAAGAAGGCGTTCTCTCCGCCAAGTCGATGAAGCCGGACGGTACGAATCAG GGTCGAGCCCTGAAGCAAACAGTCAGCGACATCAGGTACGAGGTACACAACCAGCTCGAAACGACTCGGATAACTCGAAAACGCGTTCAGGGCATAGCCA AGAGGCTAAACAAGATGCACACGGAAGGGTTGAACAACGCGATCAACTCGATCACCGTGGTAGCTGTCCTGATCGCGACGGTTGCGTTCGCGGCCATCTT CCAAGTCCCGGGGCAATACGTGGACGATCCGAACAATCTCGCTCCGGAACAGTCGGCCGGAGAAGCGAGGATCGCTTCGAAGCTGCCGTTCATGATCTTC ATCGTGTTCGACTCCGTGGCGCTCTTCATATCGCTGGCTGTCGTGGTGGTGCAAACCTCGATCGTGGTGATAGAGAGGAAGGCCAAGAAGCAGCTGATGA CGGTGATCAACAAGCTGATGTGGCTGGCTTGCGTGCTCATATCGGTTGCGTTCATCGCGTTGTCCTATGTCGTGGTCGGGAACAAGGCGAAATGGTTGGC AATTTGGGTAACCGTGATTGGGACGTTGATTATGACCGCGACAATAGGGACGATGTGTTATTGGGTGGTGGTGGTGAGGCTGGAGCAGAGGAACATTCGT AGGTCGTCGATGAGTAGGTCGAGGTCCGGATCTATGTCGATGATGCCGGAATCTGATATGGAGAATGATTATAAGCTGTACGCTATCTAA
AA sequence Show only first row Show all	>Lus10025287 pacid=23157312 polypeptide=Lus10025287 locus=Lus10025287.g ID=Lus10025287.BGIv1.0 annot-version=v1.0 MAVKGQNVDLVDELVMSDPSLINMVDNKGNIALHIAARKGRTQIVRKLLDNQGLEKVTLNRSGETAFDTAAKSGHNDITSMLEKEGVLSAKSMKPDGTNQ GRALKQTVSDIRYEVHNQLETTRITRKRVQGIAKRLNKMHTEGLNNAINSITVVAVLIATVAFAAIFQVPGQYVDDPNNLAPEQSAGEARIASKLPFMIF IVFDSVALFISLAVVVVQTSIVVIERKAKKQLMTVINKLMWLACVLISVAFIALSYVVVGNKAKWLAIWVTVIGTLIMTATIGTMCYWVVVVRLEQRNIR RSSMSRSRSGSMSMMPESDMENDYKLYAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07710			Ankyrin repeat family protein ...		Lus10025287 [exp]	0	1
AT4G25670			unknown protein		Lus10039276 [exp]	3.9	0.8981
AT5G45660			unknown protein		Lus10002778 [exp]	4.6	0.8652
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	4.7	0.8863
AT1G25682			Family of unknown function (DU...		Lus10041495 [exp]	7.2	0.8774
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	7.7	0.8790
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	12.6	0.8626
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	12.7	0.8627
AT1G15270			Translation machinery associat...		Lus10037543 [exp]	13.4	0.8704
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	17.9	0.8486
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	18.3	0.8578

Compare expression of checked genes

Lus10025287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.