Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02620 124 / 4e-33 ATANK1, ANK1 ankyrin-like1 (.1) AT1G07710 118 / 4e-31 Ankyrin repeat family protein (.1) AT5G60070 113 / 3e-29 ankyrin repeat family protein (.1) AT2G31820 97 / 3e-23 Ankyrin repeat family protein (.1) AT1G05640 95 / 1e-22 Ankyrin repeat family protein (.1) AT3G12360 64 / 5e-12 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 57 / 8e-10 Ankyrin repeat family protein (.1) AT2G01680 48 / 1e-06 Ankyrin repeat family protein (.1) AT3G04140 45 / 2e-05 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025289 [exp] 170 / 2e-50 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 154 / 3e-44 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 117 / 2e-30 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 117 / 2e-30 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 95 / 1e-22 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027075 [exp] 66 / 2e-13 AT2G31820 209 / 5e-64 Ankyrin repeat family protein (.1) Lus10003986 [exp] 66 / 2e-12 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 66 / 2e-12 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10023460 [exp] 64 / 4e-12 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080700 [exp] 162 / 2e-47 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 159 / 6e-46 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 140 / 3e-39 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 136 / 9e-38 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 132 / 3e-36 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 92 / 1e-21 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 83 / 2e-18 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 64 / 7e-12 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 62 / 2e-11 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 58 / 6e-10 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025288 pacid=23157444 polypeptide=Lus10025288 locus=Lus10025288.g ID=Lus10025288.BGIv1.0 annot-version=v1.0 ATGGAGCCTCCGGCGAGGCAGCAGAAGAAAATGACCAAGCAACTGACTGCCAAACGAGACGACTCGCCCTTTCGCGCCGCCGCCCGTGCCNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGCATAACAA GTCGGGCAAAACGGCGCTGCCCGCCGCCGCCGAGTGCGGCCACGCCGACGTAGTGAAAGAGCTCATCAAGCACTACGACACCGTTTTGGCCGGGATAAAG GCCCGGAACGGCTACGACGCCTTCCACATCGCCGCCAAACAGGGCGATTTAGAAACGTTGAGGGTACTGATGGAGGCGAATCCGGATCTGGCGATGACCT TCGATTCGTCCAATACGACGGCGCTTCACTCACCCGCAGCGCGCGGCAGCGGCAGCTCAGGGACACGTGGAGGTCGCCGACTTCCTCCTGGAGCGATGCG GCAGCGTGGTGGCGATCGCCAAGAGCAACGGCAAAACCGCTCTCCATTCGGCGGCGAGAAATGGGCATTTACAGATTGTCAAGTCGCTTCTAAGTAA
AA sequence Show only first row Show all	>Lus10025288 pacid=23157444 polypeptide=Lus10025288 locus=Lus10025288.g ID=Lus10025288.BGIv1.0 annot-version=v1.0 MEPPARQQKKMTKQLTAKRDDSPFRAAARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHNKSGKTALPAAAECGHADVVKELIKHYDTVLAGIK ARNGYDAFHIAAKQGDLETLRVLMEANPDLAMTFDSSNTTALHSPAARGSGSSGTRGGRRLPPGAMRQRGGDRQEQRQNRSPFGGEKWAFTDCQVASK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02620		ATANK1, ANK1	ankyrin-like1 (.1)		Lus10025288 [exp]	0	1
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	3.5	0.8163
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	3.9	0.8444
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	7.2	0.8188
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	7.7	0.8009
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10033948 [exp]	9.4	0.6994
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	11.3	0.8104
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	11.4	0.7847
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	12.0	0.7948
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	13.7	0.8004
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	14.8	0.8036

Compare expression of checked genes

Lus10025288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.