Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07710 552 / 0 Ankyrin repeat family protein (.1) AT5G02620 551 / 0 ATANK1, ANK1 ankyrin-like1 (.1) AT5G60070 535 / 0 ankyrin repeat family protein (.1) AT2G31820 455 / 4e-154 Ankyrin repeat family protein (.1) AT1G05640 437 / 2e-147 Ankyrin repeat family protein (.1) AT3G12360 338 / 9e-110 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 326 / 1e-104 Ankyrin repeat family protein (.1) AT2G01680 296 / 6e-94 Ankyrin repeat family protein (.1) AT1G10340 127 / 4e-31 Ankyrin repeat family protein (.1.2) AT5G54710 127 / 5e-31 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024440 [exp] 828 / 0 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 561 / 0 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 560 / 0 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10025287 [exp] 491 / 4e-173 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10008329 [exp] 454 / 2e-154 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 359 / 5e-120 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 334 / 6e-108 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 328 / 5e-106 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 326 / 2e-104 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214600 [exp] 693 / 0 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 690 / 0 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 585 / 0 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 574 / 0 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 540 / 0 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 437 / 2e-147 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 437 / 5e-147 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 338 / 1e-109 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 336 / 1e-108 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 320 / 2e-103 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10025289 pacid=23157336 polypeptide=Lus10025289 locus=Lus10025289.g ID=Lus10025289.BGIv1.0 annot-version=v1.0 ATGGAGGATCCGCCGAGGCAGCAGAAGAAAGTGACCAAGCAATTGACTGCCAAACCAGACGACTCGCCGTTTCACGCTGCCGCCCGGGCTGGAAACCTAG ACCTGCTCCTGCAACTCGTCGGGGAAGCCTCGGGGGACTACGGGGATGCGGTGGAGTTGAAGAATCTGCTCGCGAAGCAGAGCCAGTCCGGCAAAACGGC TCTGTACGTCGCCGCCGAGTGCGGCCATGCGGACATAGTGAAAGAGCTCATCAACCACTACGACACCGTTTTGGCCGGGATTAAGGCTAGAAATGGCTAC GACGCCTTGAACATTGCCGCCAAACAGGACGATTCTGAAACGTTGAGGGTACTGATGGAGGCGAACCCGGATCTGGCGATGACGTTCGATTGGGCCAATA CGACGGCGCTTCACTCAGCGGCAGCGCAGGGACACGTGGAGGTCGCCGACTTCCTCCTGGAGCGATGCGGCAGCGTGGTGGCGGTCGCCAAGAGCAACGG CAAAACCGCTCTCCATTCGGCGGCGAGAAATGGCCATTTACAGATTGTCAAGTCGCTTCTAAGTAAAGTCCCCGGAATCACTACAAGAGTTGACAAGAAA GGACAGACGGCACTCCATATGGCGGTTAAAGGGCAAAACGTTGACCTCGTTGACGAACTAGTAATGTCCGATCCTAGCTTGATCAACATGGTCGACAACA AGGGCAACATTGCCTTGCACATCGCAGCCCGCAAGGGTCGAACTCAGATTGTAAGGAAGCTGCTAGACAATCAAGGACTTGACAAAGTTACAATCAATAG GTCGGGGGAGACTGCGTTCGACACTGCTGCAAAGTCAGGGCATAACGACATTACATCGATGTTGGAGAAAGAAGGTGTTCTCTCCGCCAAATCGATGAAA CCAAACTGTATGAATCGAGGTCGAGCCCTGAAGCAAACAGTCTACGACATCAGGTACAAGATTCATAACCAACTAGAAACCACTCGGATCACTCGAAAAC GCATGCAAGGCATATCGAAGAGGATGAACAAGATGCACACAGAAGGGCTGGACAATGCAATCAACTCGATCACCGTACTTGCGGTTCTTATCGCTACCCT CGCATTTGCAGCCATCTTACAAGTCCCCGGCCAGTACGTGGACAACCCAGACAACCTCGCTCCCGGACAGTCAGCCGGGCAAGCGAGGATCGCTTCAAAG CTGCTGTTCATGATATTCATCGTGTTCGACTCCGTGGCGCTTTTCATATCGTTGGCAGTTGTGGTGGTGCAGACCTCGATAGTGGTGATAGAGAGGAAGG CGAAGAAGCAGATGATGACCGTGATCAACAAGCTGATGTGGTTGGCTTGCGTGCTTATATCGGTTGCGTTCATCGTATTGTCTTATGTCGTGGTCGGGAA CAAGGCGAAATGGTTGGCGATCGGGGTCACCATCATCGGGACGCTGATAATGACCCTAACGATAGGGATGATTCGTTATTCAGTAGTCATGGCGAGGTTG GAGCAGAGAGACATTCGTAGGTCGTTGATGAGCAGGTCGAGGTCCGGCTCGATGTCTGGAATCCGATCTATAGAATGA
AA sequence Show only first row Show all	>Lus10025289 pacid=23157336 polypeptide=Lus10025289 locus=Lus10025289.g ID=Lus10025289.BGIv1.0 annot-version=v1.0 MEDPPRQQKKVTKQLTAKPDDSPFHAAARAGNLDLLLQLVGEASGDYGDAVELKNLLAKQSQSGKTALYVAAECGHADIVKELINHYDTVLAGIKARNGY DALNIAAKQDDSETLRVLMEANPDLAMTFDWANTTALHSAAAQGHVEVADFLLERCGSVVAVAKSNGKTALHSAARNGHLQIVKSLLSKVPGITTRVDKK GQTALHMAVKGQNVDLVDELVMSDPSLINMVDNKGNIALHIAARKGRTQIVRKLLDNQGLDKVTINRSGETAFDTAAKSGHNDITSMLEKEGVLSAKSMK PNCMNRGRALKQTVYDIRYKIHNQLETTRITRKRMQGISKRMNKMHTEGLDNAINSITVLAVLIATLAFAAILQVPGQYVDNPDNLAPGQSAGQARIASK LLFMIFIVFDSVALFISLAVVVVQTSIVVIERKAKKQMMTVINKLMWLACVLISVAFIVLSYVVVGNKAKWLAIGVTIIGTLIMTLTIGMIRYSVVMARL EQRDIRRSLMSRSRSGSMSGIRSIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07710			Ankyrin repeat family protein ...		Lus10025289 [exp]	0	1
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	2.2	0.8919
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021880 [exp]	3.5	0.8830
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	3.5	0.8771
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10008523 [exp]	4.5	0.8785
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	6.0	0.8895
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	8.2	0.8522
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	9.8	0.8826
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	9.9	0.8715
AT1G18010			Major facilitator superfamily ...		Lus10043371 [exp]	10.2	0.8552
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10001506 [exp]	12.2	0.8604

Compare expression of checked genes

Lus10025289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.