Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55140 537 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G09540 488 / 8e-174 Pectin lyase-like superfamily protein (.1) AT1G30350 181 / 5e-54 Pectin lyase-like superfamily protein (.1) AT5G55720 175 / 3e-51 Pectin lyase-like superfamily protein (.1) AT1G11920 171 / 6e-50 Pectin lyase-like superfamily protein (.1) AT3G54920 171 / 8e-49 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT2G02720 162 / 7e-46 Pectate lyase family protein (.1) AT5G04310 163 / 1e-45 Pectin lyase-like superfamily protein (.1) AT3G27400 159 / 6e-45 Pectin lyase-like superfamily protein (.1) AT4G13710 157 / 4e-44 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024439 [exp] 692 / 0 AT3G55140 534 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10030313 [exp] 506 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10003307 [exp] 498 / 8e-179 AT3G55140 562 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011258 [exp] 170 / 3e-49 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 160 / 1e-45 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 159 / 4e-45 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10005254 [exp] 159 / 2e-44 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10014887 [exp] 154 / 3e-43 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 153 / 7e-43 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080600 [exp] 589 / 0 AT3G55140 554 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G214400 [exp] 581 / 0 AT3G55140 553 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G048600 [exp] 530 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G008000 [exp] 169 / 6e-49 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.011G008100 [exp] 160 / 9e-46 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.004G007300 [exp] 159 / 2e-45 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.008G148800 [exp] 159 / 1e-44 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.006G122000 [exp] 157 / 9e-44 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G339500 [exp] 153 / 4e-43 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.012G091500 [exp] 152 / 1e-42 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10025290 pacid=23157324 polypeptide=Lus10025290 locus=Lus10025290.g ID=Lus10025290.BGIv1.0 annot-version=v1.0 ATGGCTAATCAACAAGCCCCGAGCTGTTCTCCGCCGGAAATGGGAACTTCTCTGCCTTATGCTCACGTTGACTCCACCTTGCGCGCCCTCGCCGGCCAAG CTGAAGGGTTCGGCCGATTCTCTGTCGGCGGACTCCACGGCGCCCTCTATTGCGTCACCACGTTATCAGATGATGGGCCAGGATCTCTGAGAGAAGCGTG TCGGAAGAAAGAGCCCCTCTGGATCGTGTTTGAATTATCCGGCACGATACACCTAAACTCGTATTTAAACGTTTCTTCCTACAAGACCATCGATGGCCGG GGTCAAAGGATCAAACTCACAGGGAAAGGCTTGAGGCTTAAGGAATGCGAGCATGTGATCGTATGCAATCTGGAGTTCGAAGGCGGTAGGGGACCGGACG TTGATGGAATTCAGATCAAACCGAAATCGAAACACATATGGATTGACCGGTGCAGCCTCAGCGATTACGACGACGGGCTGATAGACATCACTCGCGAAAG CACTGACATTACCATTTCCAGGTGTCACTTTTCGAGGCATGACAAGACCATGCTTATCGGAGCGGATGCATCAAACATTACTGATCGGTGTATGAGGATA ACTATCCACCATTGTTTCTTTGACGGAACGCGACAGAGGCATCCTCGTGTTAGATATGCTAAAGTGCATCTGTATAATAATTACACCAGGAACTGGGGGA TTTATGCTGTTTGTGCCAGTGTGGAGTCTCAGATATACTCCCAATGCAATATATATGAAGCAGGACAGAAGAAGGTTGCATTTAAGTACCTCACTGAGAA GGCAACTGATAGGGAAGAAGCCAGCAGTGGCCAGATAAGATCCGAAGGAGATATATTCGTTACTGGAACTCAAGCTGGGATAATGAGTGCGGCAAGCGAA GCATGCATCTTTCATCCGAGGGAATATTACAGCAGCTGGACGGTGCAGCCTGCGGGAGAAATTCTGAAACAGCTTCTCCATGGGTGTACAGGGTGGCAAG CTGTTCCTCTGCCAGTTGATCAGCCTTTTGCTGCCCAGTAA
AA sequence Show only first row Show all	>Lus10025290 pacid=23157324 polypeptide=Lus10025290 locus=Lus10025290.g ID=Lus10025290.BGIv1.0 annot-version=v1.0 MANQQAPSCSPPEMGTSLPYAHVDSTLRALAGQAEGFGRFSVGGLHGALYCVTTLSDDGPGSLREACRKKEPLWIVFELSGTIHLNSYLNVSSYKTIDGR GQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDGIQIKPKSKHIWIDRCSLSDYDDGLIDITRESTDITISRCHFSRHDKTMLIGADASNITDRCMRI TIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEKATDREEASSGQIRSEGDIFVTGTQAGIMSAASE ACIFHPREYYSSWTVQPAGEILKQLLHGCTGWQAVPLPVDQPFAAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	0	1
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10039278 [exp]	1.0	0.7984
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	2.4	0.7802
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	2.8	0.7936
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	19.0	0.7439
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	19.9	0.6441
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Lus10036233 [exp]	22.6	0.6189
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009040 [exp]	26.7	0.7147
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	27.5	0.6944
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	28.9	0.6603
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	31.9	0.6294

Compare expression of checked genes

Lus10025290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.