Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09520 570 / 0 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT2G39380 509 / 1e-173 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT3G55150 488 / 2e-165 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT3G09530 472 / 2e-159 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT5G59730 430 / 5e-143 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT2G28640 373 / 2e-121 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT1G07725 365 / 4e-118 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT2G28650 333 / 3e-106 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT5G50380 277 / 1e-83 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 265 / 1e-79 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024438 [exp] 1049 / 0 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10005436 [exp] 482 / 3e-163 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 468 / 1e-157 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10040872 [exp] 452 / 1e-151 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 447 / 1e-149 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10040329 [exp] 407 / 4e-134 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10023452 [exp] 379 / 1e-123 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 378 / 7e-123 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 362 / 3e-117 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214300 [exp] 694 / 0 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.009G026900 [exp] 524 / 1e-179 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.001G234600 [exp] 514 / 8e-176 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.010G212400 [exp] 500 / 2e-170 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 486 / 8e-165 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.012G097100 [exp] 276 / 1e-83 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 275 / 3e-83 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 263 / 5e-79 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G166400 [exp] 262 / 1e-78 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 252 / 7e-75 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10025291 pacid=23157451 polypeptide=Lus10025291 locus=Lus10025291.g ID=Lus10025291.BGIv1.0 annot-version=v1.0 ATGCCTAGGAAAGGGATGAGGAGCATTTGTTTCAGCCCCAGGACGCCCTCGTTCGCTGCCGCCGTCGCACCAAACAACTCCCCACTCTCTTCCCCAGCCA GAAGCTCAATCTCGGGACTCTCAACTCCCCGCCTCAGCTTCTCCGACTACCGAACCGAACAAATTATCCAAGGCGCTTCCGCCTTGATCACCAAATGGGA CCCTGAAACATCGCCGTATGCCAAAGTCACCTCTCTTTTCTACGAGAGCAAGCGGGAGGCTGCCCAATTCCTCAAGTGCCTCACCGACCTCCAAAAGGCA ATGGGCCTCCTATCCGCCCAAGATTCCAAAGACGGCCGCCTCGTCCGAGCCCAAAGTCTCATGCAGATCGGAATGAAACGCCTCAAGAAGGAATTCTACC AAATCCTCTCCACCAACCGGGCCCACCTCGACCCCGAATCCATCTCCACCCGCTCCTCCACCACCTCTGCCAGATCCAGCGTCTCCGATTACGACGGTGA CGATGGCGTCGACGCCATCGCCGAAGTTGAAGAGGTCTCCTCGATTGCAATGGGTGATCTGAGATCGATCGCCGAGTGCATGATCTCCTCCGGCTATGCG AAAGAGTGCGTGAGCATTTATAAGGTGATCAGGAAATCGATAGTGGACGAAGGGATTTACCGGCTGGGAGTTGAGAAAATCGGTTCGGTCAGCAAGATGA GCTGGGAATCGGTCGATTTGCGGGTCAAGGCTTGGTTGGAGGCGGTTAAGGTCGCGGTTCGTACGCTATTCAACGGGGAGCGGATCCTCTGCGACCACGT CTTCGCTGCGTTCGATTCCGTTAGGGAGTCCTGCTTTGCGGACATTTCAAAAGACGGAGCTACCCTCCTGTTTGGATTCCCCGAGCTGGTTGCTAAAAAA GCTAAGAAAACGACGTCGTCCTCTCCGCCAGATAGAATTTTCAGGTTGCTGGATATGTACGCTGCCATTTCGGAAAATTGGATGGAGATCGAGTCAATCT TTTCGTTCGAGTCAACCTCAGCCGTCCGATCGCAAGCTATCAACTCGCTCACCAAACTTGGCGATTCAATCAGAGGAAACCTCGCCGAGTTCGAATCCAC CGTCCAGAAAGACTCGTCCAAATCTCCGGCTCCCGGCAGCGGAGTTCATCCTCTGACTTTCTACACCGCCGACTTCTTGTCACTGCTCTCTGACTACAGC TCAATCCTCACCGATATTCTACAGGACTGGCATCCGCCGCCGAGATCATCTAAGTTGACGGAGTCCTTCTTCGACAGTCCGAAGTCCTCCATAGAATCTC AGCCGCGGCTGGCGCTATCAACGCGGATAGCGTGGCTGATTGTCGTCCTGCTCGCTAAACTCGACGTTAAAGCCAAACAATACAAGGAAGTATCGTTGTC GTATCTATTCCTAGCGAACAATCTGAGACACGTGGTTCTGAAGGTCCGGACTTCAAACCTGCAGTTTTTATTGGGAGAGGAATGGATCGCGAAACACGAG GGGAAGGTGAGGCAGTTCGCTGCGAATTACGAGCGGCTGGCGTGGGACCAAGTGGCGGAAGCGATTCCGGAGAATGCAGACTCCGTGGGATCGGCGGAGA AAGCGAGGGAGGTGTTTAAGAGGTTCGGGGAGAGGTTCGAGGAGGCGTACAGGAAGCAAAGTTCGTGCATCGTAGACGATCCGAAGCTGAGAAACGAGAT AAAGAGGAGTATCGCGAGAAAAGTGGTGCCGAGATACTGGGCATTCTACGATGCCAACAAGACGACGGCTGGGGCTCGCAGGAACGTGAGGATATATGTG AAATATACGCCTGAGGATGTTGGGAAGTTATTGTCTGAGTTGTTTTTTGAGGCTATCGTTGAGGAAGAGAGTACGCCGCCGTCTTCTACTTCGTCGTCGT CTCATAATCAGCGAGGGCAGAGAGCTAATTAG
AA sequence Show only first row Show all	>Lus10025291 pacid=23157451 polypeptide=Lus10025291 locus=Lus10025291.g ID=Lus10025291.BGIv1.0 annot-version=v1.0 MPRKGMRSICFSPRTPSFAAAVAPNNSPLSSPARSSISGLSTPRLSFSDYRTEQIIQGASALITKWDPETSPYAKVTSLFYESKREAAQFLKCLTDLQKA MGLLSAQDSKDGRLVRAQSLMQIGMKRLKKEFYQILSTNRAHLDPESISTRSSTTSARSSVSDYDGDDGVDAIAEVEEVSSIAMGDLRSIAECMISSGYA KECVSIYKVIRKSIVDEGIYRLGVEKIGSVSKMSWESVDLRVKAWLEAVKVAVRTLFNGERILCDHVFAAFDSVRESCFADISKDGATLLFGFPELVAKK AKKTTSSSPPDRIFRLLDMYAAISENWMEIESIFSFESTSAVRSQAINSLTKLGDSIRGNLAEFESTVQKDSSKSPAPGSGVHPLTFYTADFLSLLSDYS SILTDILQDWHPPPRSSKLTESFFDSPKSSIESQPRLALSTRIAWLIVVLLAKLDVKAKQYKEVSLSYLFLANNLRHVVLKVRTSNLQFLLGEEWIAKHE GKVRQFAANYERLAWDQVAEAIPENADSVGSAEKAREVFKRFGERFEEAYRKQSSCIVDDPKLRNEIKRSIARKVVPRYWAFYDANKTTAGARRNVRIYV KYTPEDVGKLLSELFFEAIVEEESTPPSSTSSSSHNQRGQRAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10025291 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003266 [exp]	1.0	0.9579
AT2G01340		At17.1	unknown protein		Lus10016709 [exp]	9.7	0.9559
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10025430 [exp]	19.4	0.9462
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	22.2	0.9513
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10023265 [exp]	23.5	0.8990
AT1G18980			RmlC-like cupins superfamily p...		Lus10036658 [exp]	23.6	0.8989
AT4G37290			unknown protein		Lus10010255 [exp]	24.3	0.9527
					Lus10006567 [exp]	24.5	0.9516
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	24.7	0.9439
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	24.8	0.9303

Compare expression of checked genes

Lus10025291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.