Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53540 63 / 6e-13 unknown protein AT2G39435 40 / 6e-05 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025296 [exp] 209 / 2e-64 AT3G53540 456 / 7e-146 unknown protein Lus10024434 [exp] 182 / 8e-55 AT3G53540 449 / 2e-144 unknown protein Lus10003295 [exp] 40 / 0.0001 AT2G39435 115 / 3e-27 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10030320 [exp] 38 / 0.0006 AT2G39435 99 / 6e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080200 [exp] 86 / 5e-21 AT3G53540 234 / 1e-64 unknown protein Potri.006G213700 [exp] 77 / 1e-17 AT3G53540 433 / 1e-136 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025295 pacid=23157407 polypeptide=Lus10025295 locus=Lus10025295.g ID=Lus10025295.BGIv1.0 annot-version=v1.0 ATGCTTTTTGACCAGATAAACTCCGCTCTTATGGTTATAAACCGGGAGTTGAACGATCCACACCCCTGGGTAGTAAGGGCTCGAGCGAAAATTGTTACGA AATGGGTTTATTGGAATGGACTGAGCGATGGTGTGTACAAGGTGATTATGAGCCGGGGTAAGAGGGACGAAAAGGAGGTGGAAGATGAGCAAGTGATGTT GGAAGAAAAGCAGTGGTTAGATTTAGGGAGCGAGATCGATGCGATCGGGAGAGAGATCGAGGGAGTTTTAGTAGATGATTTAGTAACTGAGATTGTAGCA GTAGTGTAG
AA sequence Show only first row Show all	>Lus10025295 pacid=23157407 polypeptide=Lus10025295 locus=Lus10025295.g ID=Lus10025295.BGIv1.0 annot-version=v1.0 MLFDQINSALMVINRELNDPHPWVVRARAKIVTKWVYWNGLSDGVYKVIMSRGKRDEKEVEDEQVMLEEKQWLDLGSEIDAIGREIEGVLVDDLVTEIVA VV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53540			unknown protein		Lus10025295 [exp]	0	1
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	2.2	0.8137
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	3.2	0.8074
AT1G03080			kinase interacting (KIP1-like)...		Lus10006607 [exp]	5.7	0.7503
AT3G52155			Phosphoglycerate mutase family...		Lus10040405 [exp]	5.7	0.7685
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	7.1	0.7796
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	7.9	0.7740
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	9.2	0.7484
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10035570 [exp]	9.2	0.7789
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038285 [exp]	9.4	0.7343
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	14.4	0.7627

Compare expression of checked genes

Lus10025295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.