Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53540 414 / 4e-130 unknown protein AT4G28760 133 / 2e-31 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G39435 98 / 5e-21 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) AT5G43880 98 / 1e-20 Protein of unknown function (DUF3741) (.1) AT2G20240 72 / 8e-13 Protein of unknown function (DUF3741) (.1) AT1G18620 49 / 2e-05 unknown protein AT3G61380 45 / 0.0003 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G74160 44 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024434 [exp] 1471 / 0 AT3G53540 449 / 2e-144 unknown protein Lus10025295 [exp] 212 / 2e-64 AT3G53540 67 / 2e-14 unknown protein Lus10022843 [exp] 125 / 2e-29 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10003295 [exp] 103 / 2e-22 AT2G39435 115 / 3e-27 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10011911 [exp] 92 / 1e-18 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10030320 [exp] 84 / 3e-16 AT2G39435 99 / 6e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10011912 [exp] 52 / 2e-07 AT4G28760 141 / 2e-39 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10002008 [exp] 50 / 8e-06 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 49 / 2e-05 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213700 [exp] 651 / 0 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 561 / 0 AT3G53540 234 / 1e-64 unknown protein Potri.002G253600 [exp] 155 / 1e-38 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.010G211700 [exp] 144 / 6e-35 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.014G194600 [exp] 91 / 2e-18 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G103400 [exp] 65 / 2e-10 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.012G061900 [exp] 53 / 9e-07 AT1G74160 730 / 0.0 unknown protein Potri.015G058900 [exp] 52 / 2e-06 AT1G74160 795 / 0.0 unknown protein Potri.002G160000 [exp] 49 / 3e-05 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.014G084600 [exp] 47 / 5e-05 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [flax] [poplar] DUF3741 Protein of unknown function (DUF3741)
Representative CDS sequence Show only first row Show all	>Lus10025296 pacid=23157371 polypeptide=Lus10025296 locus=Lus10025296.g ID=Lus10025296.BGIv1.0 annot-version=v1.0 ATGGAGGCATTTTGTCGCACTAGCAGCTCAACTCTGAGACTCGGAGAAGGATACTGGCAAAATCAGGAACCGAGGGTCCTTCCCAAATCGGCCTCTAAAT CTAGTTCTGGGAGTGCTCATACCACGGATGACGATTTGTCCGTACGTGATTCGGGGTTGAGATATTCAAAACAACTAGCTGGAACACCAATCAAAAGACT ATTAGCTCAAGAGATGTCAAGGGAAACTGAATCCAAGAAAAGGCCACCTAGCATCATTGCTAGACTGATGGGCCTTGACGGTATGCCTTCTCAACCGCCA ACTTACAAGCAAGAACGGAGGTCTTCAGAAAACACCATGAAGAGAACAGTCCCAATTGAGAAGCCTCACAACAGGGTTACCGCATCAAGTAGCCGTGGGT CTTCCAGGAAAAGCTCAAGGGGGGAGCAGGAGTTTAAAGATGTCTACGAAGTCTTAGAATTATCCAGAAAGGCTGGTGAACTTTCTTGTCCACTTAGGTC TACAAACTCCAAGGTCGCAGAAGCTGAGAAGGCATTCATTCAGCAAACGTTTATGGATGCTAAACGCCTTTCGACTGACGGAAACCTTCAGGACTCAATG GAATTTCATGATACAATTGAGGATATAAACTCCAACCAGGATCTTTTATTGAGATTCCTTGAAAATCCGGATTCAATGTTCACAAAGCATACCCGTGAAC TTCATGGCGCCAGTCACAGATCACGGGTGAAGGTGTCACATACTGAAGAATGCAAAGGCAACACTGAGAAAGAAACGGCAAGGAAAAGTCGGAGAAGACC GAACGACGATCGTTGCAACCATCCTTACTTGAAGCAGGCTGGCCAAGTTACTGTCAAGGCATCTAAAGTGCAATTCGAGGAGAAAGAAAAGTCAACAGTT CTTCCTACGAAGATTGTTGTCCTCAAACCAAACCTTGCACGAGTGCAAAACAGTGGCAAATCCATTTCATCACCTTGTTCTTCTCATTCTAGTCAGCATG TTGAACTTCCTTCCACGAGGAGAAGGGAATCGGGAAAGAAGAAGTATGCTGATGATGTTAGACCTTCAAGATACGTGTCTGGAGACTGTAGAGAAGCTGC AAAGGAAGTTACCGGGGAAGTAGGAGATAGTTTTAGTTGTAGTTCCATTAATTTTCGAACTGCAGCTGGGGTCAGGGGTTATGCAGGGGACGAGAGTTCA TCCTGCAGGTCCGGGTATGAGTCAGCAAACGAATCAGATGTGACGATGGTACCTTCTAGACATTCTTTTGAGAGAAGCAGTCGTTACCGTGGTTCACCAT CCCGTCCCACCGAGTCATTTGTTAGTAGAGAGGCGAGGAAGAGACTGTCAGAGAGGTGGAAGATGACTCATAAGTCTGTAGACATGGGAGAAGTGAGCAG GAGCAGCACACTAGGTGAAATGCTTGCAATCACAGATAGGAATGCCAAACCTGCTAACTCGGCTTCCATGGGTTCGCAAAAGTCCACTGGCAAACTTGGC TGGAACAATGGTGCTGCTTCAAACTTACTTGAACCTTTGGGTATTAGCAGTAGGGATGGTTGGAAAGATCCATTCTTTGAAAGTCTGCCGAGATCAAAAT CGGTTCCTGCTTCACCCGCTGGTGGTGGAGGTAGTCCTCAAGTTGCTTCACATGGTAGAACAATTTGCGACAAGATGGCGAAAGGAAACCTTAGTCAGGT ACAAGGCTTATCTTCTAGAACTCCAAGAGCTCGAAGTAGGAAATCCATTACTCTTATACGTACTTATAGGGATGAAGGAGACACATCCCCGGAGTCCCCT CTCAGTTACATTAACTTGCAGAAGACTATGTCCACGCATAATCATTTTCAACAGAGTCAATTGGTTTACGAGGGGTCAACAGGGGACTCGGGGTTATTTC TGGAAACCGGAAGCTCCGATGCTGATCATGCAATCGAGAATGCGATCAGTTGTTCTACAGCAGTCAATCCAGAACTACCAGCTGACTTGGAGCCATTTAG TTCACAGGAACAAACTGGACCACCACCTCAAAGCTGTTCAACTCCTGTAACCCGTCCTATATGCGAACAAGAATCGTCTGCAAGCTCAAAGGAGGCCGAT CAACCCAGCCCCGTATCAGTTCTCGAAACCAACTTCTCAGATAACTTGTCCTCTAACTCCGATTGTTTCGAGAGTTTAAGTGCTGATCTCCAAGGGCTCC GGATGCAACTTAAGCTACTAAAGTTAGAGTCCGAAACCTACGACGAAGGACCCATGCTTGTTTCGAGCGACGAAGAAGACGAACTTCGCGAAGGCTCTGC TCCAGCTCACGAAGGAAGCGCCGAACTGTCATACATCATCGATGTATTGCTCAACTCCGGCATCGATGATGCCGATCCCAACACGTTCACATCGACATTA CACTCTTCCGAACGCCCCGTGAGCTCTTTGGTGTTCGAGGAGCTCGAGAAAAGGAAATATTGGGACGATAATGTGAGTTGGTCGAGGGCTGAGAGGAGGA TGCTTTTTGACCAGATAAACTCCGCTCTTATGGTTATAAACCGGGAGTTGAACGATCCACACCCCTGGGTAGTAAGGGCTCGAGCGAAAATTGTTACGAA ATGGGTTTATTGGAATGGACTGAGCGATGGTGTGTACAAGGTGATTATGAGCCGGGGTAAGAGGGACGAAAAGGAGGTGGAAGATGAGCAAGTGATGTTG GAAGAAAAGCAGTGGTTAGATTTAGGGAGCGAGATCGATGCGATCGGGAGAGAGATCGAGGGAGTTTTAGTAGATGATTTAGTAACTGAGATTGTAGCAG TAGTGTAG
AA sequence Show only first row Show all	>Lus10025296 pacid=23157371 polypeptide=Lus10025296 locus=Lus10025296.g ID=Lus10025296.BGIv1.0 annot-version=v1.0 MEAFCRTSSSTLRLGEGYWQNQEPRVLPKSASKSSSGSAHTTDDDLSVRDSGLRYSKQLAGTPIKRLLAQEMSRETESKKRPPSIIARLMGLDGMPSQPP TYKQERRSSENTMKRTVPIEKPHNRVTASSSRGSSRKSSRGEQEFKDVYEVLELSRKAGELSCPLRSTNSKVAEAEKAFIQQTFMDAKRLSTDGNLQDSM EFHDTIEDINSNQDLLLRFLENPDSMFTKHTRELHGASHRSRVKVSHTEECKGNTEKETARKSRRRPNDDRCNHPYLKQAGQVTVKASKVQFEEKEKSTV LPTKIVVLKPNLARVQNSGKSISSPCSSHSSQHVELPSTRRRESGKKKYADDVRPSRYVSGDCREAAKEVTGEVGDSFSCSSINFRTAAGVRGYAGDESS SCRSGYESANESDVTMVPSRHSFERSSRYRGSPSRPTESFVSREARKRLSERWKMTHKSVDMGEVSRSSTLGEMLAITDRNAKPANSASMGSQKSTGKLG WNNGAASNLLEPLGISSRDGWKDPFFESLPRSKSVPASPAGGGGSPQVASHGRTICDKMAKGNLSQVQGLSSRTPRARSRKSITLIRTYRDEGDTSPESP LSYINLQKTMSTHNHFQQSQLVYEGSTGDSGLFLETGSSDADHAIENAISCSTAVNPELPADLEPFSSQEQTGPPPQSCSTPVTRPICEQESSASSKEAD QPSPVSVLETNFSDNLSSNSDCFESLSADLQGLRMQLKLLKLESETYDEGPMLVSSDEEDELREGSAPAHEGSAELSYIIDVLLNSGIDDADPNTFTSTL HSSERPVSSLVFEELEKRKYWDDNVSWSRAERRMLFDQINSALMVINRELNDPHPWVVRARAKIVTKWVYWNGLSDGVYKVIMSRGKRDEKEVEDEQVML EEKQWLDLGSEIDAIGREIEGVLVDDLVTEIVAVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53540			unknown protein		Lus10025296 [exp]	0	1
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	4.5	0.8782
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	4.6	0.8980
AT2G25270			unknown protein		Lus10001945 [exp]	9.5	0.8818
					Lus10033992 [exp]	10.3	0.8308
AT5G57100			Nucleotide/sugar transporter f...		Lus10020017 [exp]	10.7	0.8757
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10011033 [exp]	10.8	0.8842
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	10.8	0.8687
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10026093 [exp]	11.0	0.8271
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	13.4	0.8682
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	13.4	0.8332

Compare expression of checked genes

Lus10025296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.