Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53560 258 / 1e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37400 251 / 6e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02590 204 / 7e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09490 169 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18420 144 / 9e-40 Protein prenylyltransferase superfamily protein (.1) AT4G39470 138 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024433 [exp] 561 / 0 AT2G37400 271 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031923 [exp] 110 / 2e-27 AT3G18420 270 / 2e-89 Protein prenylyltransferase superfamily protein (.1) Lus10035707 [exp] 104 / 4e-25 AT4G39470 257 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035087 [exp] 66 / 5e-13 AT3G18420 133 / 6e-39 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080000 [exp] 308 / 3e-103 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G213600 [exp] 296 / 2e-98 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G079200 [exp] 139 / 2e-37 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G085700 [exp] 135 / 4e-36 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G143600 [exp] 123 / 6e-32 AT3G18420 356 / 4e-123 Protein prenylyltransferase superfamily protein (.1) Potri.010G098500 [exp] 122 / 2e-31 AT3G18420 328 / 5e-112 Protein prenylyltransferase superfamily protein (.1) Potri.016G081200 [exp] 112 / 9e-31 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G142980 [exp] 87 / 3e-20 AT3G18420 244 / 5e-82 Protein prenylyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025299 pacid=23157345 polypeptide=Lus10025299 locus=Lus10025299.g ID=Lus10025299.BGIv1.0 annot-version=v1.0 ATGCCGCATATTCTCCGATCCTCCAAAAATCTTCTCCAGCTGAAAAGGGGTTTTGATCATTATAGTCTCCCTTCTTCCCCCCTTGAATTCCAAGGGTTTA AGCCCCTTTCACTCCGAGACTGTGAATCAGCCGCCATGGATTCTCTGAACTTAATCAATCACTCTCGCCAACCTCCTCTCCATTTCTCCCTCGCTCCTCA CCGCCTTTCTTTCCCTATTTCTTCACTATCTTTCCAAACCCTTCCTCCGACTTCCTCTTCCTTATCCACCGTCAGAGCTTCATCCACCGGCGCTCCGCTC CATCGTAACCCTAAATCCTCCCTTACCGAATCCCTAGCACCTTTCTTCAAAGCTACATCCATCACACTCACCGCGGCCGCCGCATTGCTGCTCTTCCAGC TGCATGCCAAGCCATCTATCGCGTCTCCGATCGCCGAGCCTGCCACGGTCGAGCCAGCTGCCGAAGAAACTTCTTCCAAGGAAGAAAAGCCCGATATTCC GATTGAAGACCAAGAGAGGACTCTGGAGGAGCTACTGCAGCAAAAACCTAACGACATCGACGCCCTAAGAGCTCTAATGGATGTTAAAATCAAGGCTCGC AAGATTTCGGAAGCGATTAGGTTAGTCGACCGCCTGATAGTTCTTGAGCCAAATGACAGCGAGTGGCCGCTGCTGAAGGCACAAATCTACACCTACGGCG GCGACAACGAATCTTCAAGAAAGATGTACGAAGAAATCTTGCAGAAGGATCCGGTCTGCGTGGAGGCGTATCACGGCCTATTGACGGCGCGTGCAGAGGA CGGGATGTCTACCGGCTATGTGCTGAAAAGAGTGGAAGAGGCGATGAAAGTTTGCAAGAAGGACAAGGCGAGGGACTTCAAGTTACTGATTGGGCAAGTG AGAGTGATGGAGGAGAAGTATGATGAAGCTCTGGACGTGTACGAGGAGTTGGTGAAGGAGGAGCCTACAGACTTCAGGCCGTATTTGTGCCTAGGGATCA TTTACACTCTGATGAGGAGGATGGACATGGCAGCGGAGAAGTTTGAGCAGTTCAAGAGATTGGTTCCCAAGAACCATCCATGCAGAGAATTTTACCTGAA AAATATGTTCGGCTCCAGTTTCTTTGCGGATGAGAAGCTGAACGGAATTGCAAGGTGA
AA sequence Show only first row Show all	>Lus10025299 pacid=23157345 polypeptide=Lus10025299 locus=Lus10025299.g ID=Lus10025299.BGIv1.0 annot-version=v1.0 MPHILRSSKNLLQLKRGFDHYSLPSSPLEFQGFKPLSLRDCESAAMDSLNLINHSRQPPLHFSLAPHRLSFPISSLSFQTLPPTSSSLSTVRASSTGAPL HRNPKSSLTESLAPFFKATSITLTAAAALLLFQLHAKPSIASPIAEPATVEPAAEETSSKEEKPDIPIEDQERTLEELLQQKPNDIDALRALMDVKIKAR KISEAIRLVDRLIVLEPNDSEWPLLKAQIYTYGGDNESSRKMYEEILQKDPVCVEAYHGLLTARAEDGMSTGYVLKRVEEAMKVCKKDKARDFKLLIGQV RVMEEKYDEALDVYEELVKEEPTDFRPYLCLGIIYTLMRRMDMAAEKFEQFKRLVPKNHPCREFYLKNMFGSSFFADEKLNGIAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	0	1
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	1.0	0.9170
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	1.4	0.8982
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	2.8	0.8834
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	4.2	0.8843
AT4G11350			Protein of unknown function (D...		Lus10036382 [exp]	5.5	0.8760
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	6.2	0.8608
AT3G06150			unknown protein		Lus10034027 [exp]	6.3	0.8688
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	7.5	0.8704
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	9.5	0.8716
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	11.2	0.8661

Compare expression of checked genes

Lus10025299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.