Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53570 731 / 0 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G24740 617 / 0 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT4G32660 519 / 0 AME3 Protein kinase superfamily protein (.1.2.3) AT5G35980 169 / 1e-45 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G13350 162 / 4e-43 Protein kinase superfamily protein (.1.2) AT2G17530 155 / 3e-42 Protein kinase superfamily protein (.1.2.3) AT3G53640 158 / 4e-42 Protein kinase superfamily protein (.1) AT3G17750 158 / 1e-41 Protein kinase superfamily protein (.1) AT3G25840 157 / 1e-41 Protein kinase superfamily protein (.1.2) AT1G73450 157 / 3e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024431 [exp] 858 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10043309 [exp] 642 / 0 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10019458 [exp] 640 / 0 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10036878 [exp] 606 / 0 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10006230 [exp] 258 / 1e-83 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2) Lus10027636 [exp] 184 / 6e-56 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2) Lus10009542 [exp] 165 / 5e-44 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 164 / 2e-43 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10031902 [exp] 161 / 1e-42 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079900 [exp] 758 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 738 / 0 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.015G085700 [exp] 633 / 0 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 629 / 0 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.010G049100 [exp] 608 / 0 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.006G244400 [exp] 556 / 0 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G075300 [exp] 167 / 7e-45 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 167 / 1e-44 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.010G188400 [exp] 164 / 4e-44 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 163 / 3e-43 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025301 pacid=23157343 polypeptide=Lus10025301 locus=Lus10025301.g ID=Lus10025301.BGIv1.0 annot-version=v1.0 ATGGAGACGCAAAGGATCACAGAATTTCCGCATCGGAACGTGGATAAGCGTCCAAAGAAGAGGCCTCGGTTAACATGGGATATGCCGCCTCCTTTTCTTC CTCCTCATCTTCCTCCTCATCTTCCTCCACATCTTCCAGCTGCTACTTCAAAGGTGCTTCCTGCAGTTTATTTTGGGCAGGAGTTTGGGAATGGAGGTGG AATACAGAATTATACGTATCCCAATTTCTTTTACAGGGATCTTCAGGTTCCTCGCAACGTCTCTCCCCCGTGGAGGCCAGATGATAAAGATGGCCATTAT GTATTCGCCATTGGGGATAGCTTAACATCTCGCTACAAGATTCTTAGCAAAATGGGTGAAGGGACATTTGGGCAGGTATTGGAATGCTTTGATAATGAAA AGAGAGAAGGTGTGGCGATCAAAATTGTCCGCTCGATACACAAATATCGTGAAGCAGCAATGATTGAAATTGACGTTCTTCAAAGGCTTGCAAGGCATGA TGTTGGAGGAAGACGTTGTGTTCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATATGATTTT CTCCGGAAAAACAACTACAGATCATTTCCTATTGATCTTGTGCGGGAGCTCGGCAGACAACTTTTGGAGTCTGTTGCATTTATGCATGATTTGCGTTTGA TTCATACTGATCTGAAGCCGGAGAATGTTCTGCTCGTTTCTTCTGATTCTGTCAAAGTACCAGACTACAAGTCTCTATCACGATCAATAAAGGATGGATC TTATTTTAAAAACCTACCCAAGTCAAGTGCTATTAAGTTGATTGATTTTGGGAGCACAGCGTTTGAACATCAAGATCACAGCTATGTGGTGTCTACTCGG CATTACCGTGCTCCAGAGGTTATATTAGGCCTTGGATGGAACTACCCCTGTGACTTGTGGAGCATTGGTTGCATACTAGTTGAACTATGCTCTGGCGAGG CCCTTTCCCAGACGCATGAGAATTTGGAGCATCTCGCTATGATGGAGAGAGTTTTAGGCCCATTGCCTCAGCATATGACGGTCAGAGCTGATCGTCGTGC GGAGAAATATTTCCGCCGGGGTGTTAGGCTGGATTGGCCTGAGGGTGCAACCTCTAGAGAAAGCATGAAGGCAGTCTGGAAGTTGCCTCGACTGCCGAAC CTAGTAATGCAGCATGTAGATCACTCTGCTGGTGACTTAATCGATCTCTTACAAGGTCTACTGAGATATGATCCAGCAGAGAGGCTTAAAGCACGAGAAG CGCTGCTGCATCCCTTCTTCAGCAGAGACCTGAGAAGGTGCGGTGGCTATTCCTTGTGA
AA sequence Show only first row Show all	>Lus10025301 pacid=23157343 polypeptide=Lus10025301 locus=Lus10025301.g ID=Lus10025301.BGIv1.0 annot-version=v1.0 METQRITEFPHRNVDKRPKKRPRLTWDMPPPFLPPHLPPHLPPHLPAATSKVLPAVYFGQEFGNGGGIQNYTYPNFFYRDLQVPRNVSPPWRPDDKDGHY VFAIGDSLTSRYKILSKMGEGTFGQVLECFDNEKREGVAIKIVRSIHKYREAAMIEIDVLQRLARHDVGGRRCVQIRNWFDYRNHICIVFEKLGPSLYDF LRKNNYRSFPIDLVRELGRQLLESVAFMHDLRLIHTDLKPENVLLVSSDSVKVPDYKSLSRSIKDGSYFKNLPKSSAIKLIDFGSTAFEHQDHSYVVSTR HYRAPEVILGLGWNYPCDLWSIGCILVELCSGEALSQTHENLEHLAMMERVLGPLPQHMTVRADRRAEKYFRRGVRLDWPEGATSRESMKAVWKLPRLPN LVMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALLHPFFSRDLRRCGGYSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	0	1
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	3.2	0.9037
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	4.9	0.8886
AT1G05410			Protein of unknown function (D...		Lus10021915 [exp]	7.4	0.8690
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	7.7	0.8547
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	9.4	0.8560
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	9.8	0.8595
AT3G14910			unknown protein		Lus10043078 [exp]	11.1	0.8788
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10000321 [exp]	11.4	0.8159
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	11.5	0.8763
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	13.2	0.8297

Compare expression of checked genes

Lus10025301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.