Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55280 99 / 6e-27 RPL23A2, RPL23AB RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) AT2G39460 97 / 2e-26 RPL23A1, RPL23AA, ATRPL23A RIBOSOMAL PROTEIN L23A1, ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ribosomal protein L23AA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024430 [exp] 288 / 8e-102 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10004942 [exp] 101 / 5e-28 AT3G55280 207 / 7e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005441 [exp] 101 / 8e-28 AT3G55280 208 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10023438 [exp] 99 / 4e-27 AT3G55280 206 / 4e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10030325 [exp] 99 / 5e-27 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005883 [exp] 99 / 5e-27 AT3G55280 205 / 7e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10003290 [exp] 99 / 6e-27 AT3G55280 207 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040316 [exp] 99 / 8e-27 AT3G55280 202 / 2e-67 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040865 [exp] 98 / 2e-24 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213300 [exp] 112 / 4e-32 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.010G210300 [exp] 101 / 6e-28 AT3G55280 195 / 7e-65 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.009G027000 [exp] 100 / 1e-27 AT3G55280 199 / 2e-66 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.016G079800 [exp] 100 / 2e-27 AT3G55280 187 / 5e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.008G050200 [exp] 96 / 5e-26 AT3G55280 187 / 8e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [flax] [poplar] Ribosomal_L23 Ribosomal protein L23
Representative CDS sequence Show only first row Show all	>Lus10025302 pacid=23157439 polypeptide=Lus10025302 locus=Lus10025302.g ID=Lus10025302.BGIv1.0 annot-version=v1.0 ATGCTGCAGATTCTCACCTCCGCCTCCGCGAACTGCTTGGTGCCGAGGATTTCAGTACCGACGACGATCAAATCCGAGAAGAGGACAAGCAATCTGGTCG AATTTCATGGCTCAACAAAGAGAAATGCGAGGTTCTCAAGCCTGAGCACACATGCGCGTAAATTTGACAATCTGGACCAGTATCAGTGCATCAGCCGTCC GTTAGCCAGCGAGGCGGCGATGAAGAATGTGATAGAGAACAATACGCTGGTCTTCACCGTCGATGTAGGTGCAGATAAGAAGCAGATTAGAGCGGCGATG AAGAATGTGTTTAATGTTGAGACCAGGAAAGTCAACACGTTAATCAGGCCAGATAAGAGGAAGAAGAAAGCTTTCGTGATGCTGAAACCGGAGTATAACG CTGTGGATGTAGCAAAGCGACTTGGCATTCTGTGA
AA sequence Show only first row Show all	>Lus10025302 pacid=23157439 polypeptide=Lus10025302 locus=Lus10025302.g ID=Lus10025302.BGIv1.0 annot-version=v1.0 MLQILTSASANCLVPRISVPTTIKSEKRTSNLVEFHGSTKRNARFSSLSTHARKFDNLDQYQCISRPLASEAAMKNVIENNTLVFTVDVGADKKQIRAAM KNVFNVETRKVNTLIRPDKRKKKAFVMLKPEYNAVDVAKRLGIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10025302 [exp]	0	1
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10035863 [exp]	1.0	0.9663
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10024430 [exp]	1.4	0.9544
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10030990 [exp]	3.5	0.9392
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	7.1	0.9213
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	10.2	0.9305
AT3G18680			Amino acid kinase family prote...		Lus10020884 [exp]	10.7	0.9281
AT3G55040		GSTL2	glutathione transferase lambda...		Lus10040347 [exp]	11.5	0.8971
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	12.1	0.9274
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10007772 [exp]	12.8	0.8749
AT1G11430			plastid developmental protein ...		Lus10007615 [exp]	13.5	0.8832

Compare expression of checked genes

Lus10025302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.