Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53580 493 / 1e-175 diaminopimelate epimerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024429 [exp] 628 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120900 [exp] 488 / 1e-173 AT3G53580 491 / 6e-175 diaminopimelate epimerase family protein (.1) Potri.006G102700 [exp] 486 / 5e-173 AT3G53580 488 / 5e-174 diaminopimelate epimerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0288 [flax] [poplar] DAP_epimerase PF01678 [flax] [poplar] DAP_epimerase Diaminopimelate epimerase
Representative CDS sequence Show only first row Show all	>Lus10025303 pacid=23157378 polypeptide=Lus10025303 locus=Lus10025303.g ID=Lus10025303.BGIv1.0 annot-version=v1.0 ATGTCTGCAACCGCCGCCATTTCCCTCTCTATCTCGCCGTTGACCCGCCAATCTGCTGCCGTTGCTGCTTTTAATCCTCTTTGGTCTTCTTCTTCCTTCT CAACTGTTTCGGTTTCTCTCCCTGTAGCTCTTCGGCTCAGTTCCCTCAGCTCAAGTGTTTCGCTTAGAAACCCTAGCTTCCGCGTCTTTGCTACCTCCAT GAGCACACACGCCCCGGAGCAAACATCGCCGACCGCATTCCTCGATCGCAGAGAGAGCGGTGTCCTCCACTTCGTCAAGTATCACGGCCTCGGAAATGAC TTCATCCTGGTGGACAACAGGGACTCTACTGAACCTAAAGTTACTCCGGAGCAAGCAAAGAAGCTATGCGACAGGAACTTCGGCATTGGGGCTGACGGAG TGATTTTCGCCATGCCAGGGACTAATGGCACTGATTACACCATGAGGATCTTCAACTCTGATGGTAGTGAACCTGAAATGTGTGGTAATGGTGTGCGTTG CTTCGCCAGGTTTATTGCAGAGCTGGAGAATTTGCGAGGGAATCACAGTTTTAAAGTACACACCGGTGCTGGCCTAATTGTTCCTGAAATCCAAGACGAT GGGAAGGTCAGGGTTGACATGGGTGAGCCAATACTGAAAGCAGCTGATGTACCAACCGGGCTTCCAGCAAATAAGCAAGAAGCTGCCGTTGAATCTGAAT TAGATATCGATGGAGTAACCTGGAATGTGACTTGTGTTAGTATGGGAAATCCTCATTGTGTGACTTTTGGTACCAAAGAAAACAAGGATCTGCAGGTTGA TGAACTAAATTTGGCTGAAATTGGCCCGAAATTTGAGAAACACGTTATGTTTCCTGCACGTACAAATACAGAGTTTGTCCAAGTTTACTCACCATCACAT CTGAAAATGCGAGTATGGGAACGTGGAGCAGGGGCAACTCTAGCGTGTGGAACTGGGGCTTGTGCAACGGTGGTGGCTGCTGTTCTTGAAGGTCGTGCTG GAAGGAGATGCACGGTGGATTTGCCTGGAGGGCCGCTAGAGATAGAGTGGAGCGCTGAAGACAACCGTATCTACATGACTGGCCCTGCCGAAGTTGTGTT TTACGGTTCCGTCCCTCTTTGA
AA sequence Show only first row Show all	>Lus10025303 pacid=23157378 polypeptide=Lus10025303 locus=Lus10025303.g ID=Lus10025303.BGIv1.0 annot-version=v1.0 MSATAAISLSISPLTRQSAAVAAFNPLWSSSSFSTVSVSLPVALRLSSLSSSVSLRNPSFRVFATSMSTHAPEQTSPTAFLDRRESGVLHFVKYHGLGND FILVDNRDSTEPKVTPEQAKKLCDRNFGIGADGVIFAMPGTNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLRGNHSFKVHTGAGLIVPEIQDD GKVRVDMGEPILKAADVPTGLPANKQEAAVESELDIDGVTWNVTCVSMGNPHCVTFGTKENKDLQVDELNLAEIGPKFEKHVMFPARTNTEFVQVYSPSH LKMRVWERGAGATLACGTGACATVVAAVLEGRAGRRCTVDLPGGPLEIEWSAEDNRIYMTGPAEVVFYGSVPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53580			diaminopimelate epimerase fami...		Lus10025303 [exp]	0	1
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	1.0	0.9706
AT3G26340			N-terminal nucleophile aminohy...		Lus10011369 [exp]	3.0	0.9520
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	3.2	0.9554
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001926 [exp]	3.9	0.9494
AT3G26340			N-terminal nucleophile aminohy...		Lus10006426 [exp]	6.2	0.9397
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	6.3	0.9511
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	7.1	0.9378
AT1G42960			unknown protein		Lus10012242 [exp]	9.8	0.9341
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	10.2	0.9397
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10038845 [exp]	10.6	0.9381

Compare expression of checked genes

Lus10025303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.