Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37420 1215 / 0 ATP binding microtubule motor family protein (.1) AT3G45850 886 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 832 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 697 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G22610 235 / 7e-64 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G47820 230 / 2e-62 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G59540 226 / 9e-62 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G27550 224 / 2e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 226 / 9e-61 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G60930 226 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024429 [exp] 1863 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10018120 [exp] 880 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 862 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 705 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 697 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 676 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 663 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 631 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025708 [exp] 243 / 2e-66 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082900 [exp] 1361 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G233700 [exp] 891 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 883 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 729 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 695 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 692 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 236 / 2e-64 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 235 / 8e-64 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 235 / 2e-63 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 227 / 3e-61 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10025304 pacid=23157319 polypeptide=Lus10025304 locus=Lus10025304.g ID=Lus10025304.BGIv1.0 annot-version=v1.0 ATGTCGATCTCACTCACACCTGATCAGTTTAGGAAGGTAGGGTTAGGAGTAGTACCGTCTCCGTGTCCGTTCCTTACTCCCCGGCCGGAGAGACGCCGGC CGGATTCCAGAGGTTCCGACTGGAGCTCCATCCGTCATGACCGATATAAAGAAGTTAACGTCCAAGTCTTGCTCAGATGCAGGCCTTTGAGTGATGAAGA GCAAAGAGCGAACGTGCCAAAAGCGATCTCTTGCAATGAACAGAGAAAAGAAGTAACCGTTCTGCAAAGTGTAGCTAACAAGCAAGTAGATAGAGCTTTT ACGTTTGACAAGGTTTTTGGGCCTAAAGCGCAGCAGAGAGCAATTTATGACCAAGCCATCTCCCCGATAGTGAAAGAAGTTCTTGATGGTTTCAACTGCA CCGTGTTTGCTTATGGGCAGACAGGCACGGGCAAAACTTATACAATGGAAGGTGGAATGAGAAATAAGGGTGGAGATTTGCCTGCTGAGGCTGGTGTTAT CCCTAGAGCCGTTCGCCAAATATTTGATACCTTAGAGGCCCAAAGGGCTGATTATAGCATGAAAGTGACGTTCCTGGAGCTGTACAATGAAGAAATAGCT GATTTGCTGGCGACAGAAGACAACGCGAGATTCGTAGATGATAGGCAGAAGAAACCAATTTCTTTGATGGAGGATGGAAGGGGTTGTGTGGTTGTAAGAG GACTTGAAGAAGAAGTAGTGTATAGTGCAAATGATATCTACACGGTCTTGGAACGAGGAGCAGCTAAAAGGCGTACAGCAGACACTTTATTGAACAAGCG CAGCAGTCGCTCTCACTCTATTCTTTCCATCACTGTCCATATAAAAGAAGCGAATATTGGAGATGAAGAACTTATCAAATGTGGCAAGCTGAATCTTGTT GATTTGGCTGGTTCGGAAAATATCTCCCGCTCTGGTGCAGGAGAGGGCCGTGCAAGAGAAGCGGGAGAAATAAACAAGAGTTTACTTACCCTGGGTCGAG TTATAAATGCATTGGCAGAACATACAGCTCATATACCTTATAGAGATAGCAAATTGACGAGGCTACTAAGAGACTCCTTGGGTGGGAAGACAAAAACTTG CATCATTGCAACAATTTCTCCATCTGGTCATTCTCTGGAAGAAACACTGAGCACTCTTGATTATGCCCATCGTGCTAAAAATATTAGAAACAAGCCCGAG GCAAACCAGAAAATTTCTAAGGCTGTTTTGCTCAAAGATCTATTGTTAGAGATTGACCGAATGAAAGAAGATGTTCGAGCAGCCAGGGAAAGGAATGGCG TGTACGTTCCACATGATAGATATGCTATGGAAGAAGCTGAAAAGAAGACAAGGATTCAGATGATAGAACAATTGGAGGTTGATTTGAACCTCAGCAAGAA GGAAGTTGCAAGATTCCGGGAGCTCTATCTGTCTGAGCAAGAAGAAAAACTGGAAATGCAAAGTGAGCTCAAGGAGTGTAAGGTGAATCTTGAAAACAGT AACAAAGAACTGTCGGATCTTCGAGAGAATTATAGAGTCGCAATCTCAACTTTGAAAGAAAAAGAATTCATCATTTCTAAACTTCTGTATTCAGAAAATT CCTTAATTGAACGGGCGAAAGAGTTGTCGCATGATTTGCATTCTGCTTCGGAAGATATTACTTCACTCTTCACAACATTAGATCAGAAAGATGAGATGGA AACAGAAAACCAGAGGATGGTTTTGAGATTCGGTTCTCAACTCGACCAGAGTTTGAAAGACCTGCACAGGACCGTTCTGGGTTCGGTTTCTCAACAACAG CATCAAATGAGAAGCATGGAAGAACATGCTCAATCATTCCTAGCTAGTAAATGTGATGCAACCATGGACTTGGAATTACGAATAAAGAAGATGGCAGATA CATATTCTTCAGGAATTGAGTCCTTGAAGAAATTTGCTGATAATATGAGCGTAAAGTCTTCTGCTGACATGGAGCAGTTGAACAATACAATCTCATCCCA GGTGACAGCTAGTGAACAGTTCTTGGCGTTCACTGTATCCGAGGCCAAAGGGACTATTGAGGACATTCAGAACACGTTACGAGAGCAAAAACAAATATTG TCTTTCTCCACTCAACAACAAGAGAAGGGACTAGAACGAAGCCTGAGACATGCTCAAATGATAACAAAGGCAACATTGGACTTCTTCAATGACATCAATG TTCAGGCTTCTAAAGTTTCAACTGTTCTTGAAGAAAGCCAGATCAAACAGTCTGATTTGTTAATCAATTTCCAAATGACATTTCAAGAAGAGACGGTCAG AGAAGAGAAACAAGCTCTGGAAGATATAATTAAAATACTGAGGAACTTGACATCTAAAAGGACAACTATGGTAGCGGAGGCATCCAGGAACATGCAAGGG CTGAGAACAGAGGAACATAGGAAAATACTACAAGAAATTAACTACATTCACCATATTTCAACAGATGCTAACGATATGATTAGATATGCGCAAGACGTTA ACAGGCACTTCACGGAGGACTCATTCTCAGTGGCCCAGTCAAGCGTGGTCATGAAAGATTCCATCCGAGAATGTTCGAAGAAAGTGAATTGCTCAATGGA ACAGTGGGAAAATGTACAATCAAATGCAAGCAATCGCAACCAAAGCATGTTAATAGGGATAGGATCTGCTGTGAGGGAAAAGAATAATGTCAATAACGCT GCACATCAAGAATTCTTGTCTACATCCTCTGCCATTGATGAAGACTTCAGTGCCGGAACTGCTGATGTTATGGTAGCAGTTCGAGATACCCTGAACAGAG ACAAGGAGAATACAAATGAACTGGACGCCATGACTGCATTGTGCATGAATCAACTCAAGTCCATACAAGATAACCATGGCGAAAGCGTAGCGAACATCAG AACCAAAGCAGAGAAATGTCTCACGCAGGAGTATCAGGTAGACGAGGACGCGAGTTCAAGGGCGGAAAGGAGGATGATATCGGTACCAAGCTTGTCATCC ATTGAGAAAATGAGAATGTCATGGAGCAAGATTCCACTGGTGCTCAATGGTAGAGCTCCTCTAGGTGATCTCAATTAG
AA sequence Show only first row Show all	>Lus10025304 pacid=23157319 polypeptide=Lus10025304 locus=Lus10025304.g ID=Lus10025304.BGIv1.0 annot-version=v1.0 MSISLTPDQFRKVGLGVVPSPCPFLTPRPERRRPDSRGSDWSSIRHDRYKEVNVQVLLRCRPLSDEEQRANVPKAISCNEQRKEVTVLQSVANKQVDRAF TFDKVFGPKAQQRAIYDQAISPIVKEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQRADYSMKVTFLELYNEEIA DLLATEDNARFVDDRQKKPISLMEDGRGCVVVRGLEEEVVYSANDIYTVLERGAAKRRTADTLLNKRSSRSHSILSITVHIKEANIGDEELIKCGKLNLV DLAGSENISRSGAGEGRAREAGEINKSLLTLGRVINALAEHTAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSGHSLEETLSTLDYAHRAKNIRNKPE ANQKISKAVLLKDLLLEIDRMKEDVRAARERNGVYVPHDRYAMEEAEKKTRIQMIEQLEVDLNLSKKEVARFRELYLSEQEEKLEMQSELKECKVNLENS NKELSDLRENYRVAISTLKEKEFIISKLLYSENSLIERAKELSHDLHSASEDITSLFTTLDQKDEMETENQRMVLRFGSQLDQSLKDLHRTVLGSVSQQQ HQMRSMEEHAQSFLASKCDATMDLELRIKKMADTYSSGIESLKKFADNMSVKSSADMEQLNNTISSQVTASEQFLAFTVSEAKGTIEDIQNTLREQKQIL SFSTQQQEKGLERSLRHAQMITKATLDFFNDINVQASKVSTVLEESQIKQSDLLINFQMTFQEETVREEKQALEDIIKILRNLTSKRTTMVAEASRNMQG LRTEEHRKILQEINYIHHISTDANDMIRYAQDVNRHFTEDSFSVAQSSVVMKDSIRECSKKVNCSMEQWENVQSNASNRNQSMLIGIGSAVREKNNVNNA AHQEFLSTSSAIDEDFSAGTADVMVAVRDTLNRDKENTNELDAMTALCMNQLKSIQDNHGESVANIRTKAEKCLTQEYQVDEDASSRAERRMISVPSLSS IEKMRMSWSKIPLVLNGRAPLGDLN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37420			ATP binding microtubule motor ...		Lus10025304 [exp]	0	1
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	1.7	0.9791
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	2.4	0.9730
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10016015 [exp]	2.8	0.9651
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10026803 [exp]	5.8	0.9460
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	6.0	0.9721
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	6.3	0.9687
AT2G22610			Di-glucose binding protein wit...		Lus10035954 [exp]	6.3	0.9672
AT1G03470			Kinase interacting (KIP1-like)...		Lus10005933 [exp]	6.5	0.9431
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10030028 [exp]	8.5	0.9643
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10021988 [exp]	8.9	0.9642

Compare expression of checked genes

Lus10025304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.