Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37440 474 / 2e-164 DNAse I-like superfamily protein (.1.2) AT3G63240 405 / 3e-136 DNAse I-like superfamily protein (.1) AT5G65090 396 / 8e-134 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G32010 328 / 1e-105 CVL1 CVP2 like 1 (.1.2) AT1G05470 322 / 5e-103 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G04980 310 / 9e-101 DNAse I-like superfamily protein (.1.2) AT4G18010 262 / 3e-80 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G34120 260 / 7e-80 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT1G71710 261 / 2e-79 DNAse I-like superfamily protein (.1.2) AT2G01900 247 / 1e-76 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024427 [exp] 905 / 0 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 382 / 1e-127 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 380 / 4e-127 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 366 / 5e-122 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 339 / 1e-112 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10042619 [exp] 348 / 3e-112 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 334 / 9e-108 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10006904 [exp] 323 / 4e-104 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10008934 [exp] 303 / 2e-100 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G078000 [exp] 400 / 6e-134 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 397 / 1e-133 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 394 / 9e-133 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 383 / 2e-127 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.012G041600 [exp] 332 / 7e-109 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 330 / 8e-107 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 325 / 7e-105 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.015G032200 [exp] 318 / 2e-103 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.002G050000 [exp] 318 / 4e-102 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 313 / 3e-100 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10025305 pacid=23157355 polypeptide=Lus10025305 locus=Lus10025305.g ID=Lus10025305.BGIv1.0 annot-version=v1.0 ATGGAGGGACATCTTTGGTTAGTTGAAGAAATAAGGATTGCGATTGCCACGTGTCCTCTTTACCACGCTTTACTGGGTACTTGCTCATATCACTTGTTTA GCTCTCTAACCTCTCTCCTATATTCCCACCAACGAACAGAAGGATTGCTGACGGAAGAACTCGACGATCTGAAACCGGCGAAAACAGAGACCGATACACC GCCGGTCGTCGATTCTTTAGATCTCAAGATGTTTGTTGGCACATGGAACGTCGGAGGCAAGTCTCCTCACGATGGCTTGAACTTGAAAGATTGGCTGCGT TCGTCGTCACCGTCCGATATATACGTCCTAGGGTTTCAGGAAATTGTTCCGTTGAACGCCGGCAACGTTCTGGGCCCGGAGGACACCGCTCCGGCGACGA AGTGGCTGTCGCTCATCTGGCAGGCGCTGAACGGGACCAAGTCGGACGAAGAGCTCTGCCAGTACTACGCCGCCGCCGCCGAGCAGAAATGGGCTGCGTC ACCGCGGCCAGTTGATCAATCAGCGAAGCCTCCTCGGCTCAGCTTCTCGAACCTGATTTCCATAGAGGACGAACTCGGGAGGGAGGATTTCCAGAGGTTT GTCAGTTTGAATTCCAACGTCGCCGGATCTACTGAAGTCCTTCCTAGCCCACGGCCGTCGAATTCCGGCGATCCGGGGAGGAGGCCGAAGTACTGCCTCG TGACTAGCAAGCAGATGGTTGGGATTTTTCTCTGCGTTTGGGTTCGAGCCGATCTGGTTGAACACCTAAGCAATCTAAAGGTTTCTTGCGTTGGGCGCGG AATCATGGGCCGATTAGGAAACAAGGGATCAGTATCGATAAGTATGAGTCTATACAATACAACGTTCTGTTTTGTGGGTACGCATTTAACATCAGGGGAG AAAGAAGGAGACGAAACCAGAAGGAATTCTGATGTTTGTGAGATTTTGAAGAAAACCAGATTCAATAATCACCCGGAAACGATACTAGATCACGACAATG TAATTTGGTTGGGAGATTTGAACTACCGGTTAGCAACCACACACGTGGAAACGTGCGAATTGTTGGAGAAGAACGATTGGGAAACTTTGCTTGAGAAAGA TCAGCTGAAGATACAGCGGAAGGCTGGGAGGATTTTCGAAGGATGGGAGGAAGGTCAGATCTACTTCGCTCCGACTTATAAGTATTTAGCCGATTCGGAT AATTACGCTGTCCAGGCTTGTAAGTCGAAAGAGAAACGGCGGATTCCGGCGTGGTGCGACCGGATACTGTGGAAAGGCGACGGGCTGAAGCAGATTTGGT ATGTTAGAGGGGAATCTAAGTTTTCCGATCACCGGCCAGTTTACTCGTTGTTCTCGGTCAAGGTGAAAGCCGATGAGGGAAGGAAATTGGTGAAGTCGGA GTCCATGGTGCGTAAATCTTCGAGGTTTTTCCCGGTGAGGTCTTCGCCGACGACTTCCATTCTGTTGCAGTCTCCCGGTGCGGCGAAAGTTCGGGCGGAG GAGCTGTTGGGAATCCCGGCGACAGCGAGCCCTCCGATATTGACGTGTCTTCCGGTAACTTAG
AA sequence Show only first row Show all	>Lus10025305 pacid=23157355 polypeptide=Lus10025305 locus=Lus10025305.g ID=Lus10025305.BGIv1.0 annot-version=v1.0 MEGHLWLVEEIRIAIATCPLYHALLGTCSYHLFSSLTSLLYSHQRTEGLLTEELDDLKPAKTETDTPPVVDSLDLKMFVGTWNVGGKSPHDGLNLKDWLR SSSPSDIYVLGFQEIVPLNAGNVLGPEDTAPATKWLSLIWQALNGTKSDEELCQYYAAAAEQKWAASPRPVDQSAKPPRLSFSNLISIEDELGREDFQRF VSLNSNVAGSTEVLPSPRPSNSGDPGRRPKYCLVTSKQMVGIFLCVWVRADLVEHLSNLKVSCVGRGIMGRLGNKGSVSISMSLYNTTFCFVGTHLTSGE KEGDETRRNSDVCEILKKTRFNNHPETILDHDNVIWLGDLNYRLATTHVETCELLEKNDWETLLEKDQLKIQRKAGRIFEGWEEGQIYFAPTYKYLADSD NYAVQACKSKEKRRIPAWCDRILWKGDGLKQIWYVRGESKFSDHRPVYSLFSVKVKADEGRKLVKSESMVRKSSRFFPVRSSPTTSILLQSPGAAKVRAE ELLGIPATASPPILTCLPVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37440			DNAse I-like superfamily prote...		Lus10025305 [exp]	0	1
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	7.0	0.9034
					Lus10002087 [exp]	11.7	0.8981
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	14.6	0.8988
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	18.1	0.8972
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	18.8	0.8944
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	21.2	0.8880
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	21.3	0.8967
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	21.6	0.8804
AT5G05340			Peroxidase superfamily protein...		Lus10008581 [exp]	23.9	0.8710
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10028880 [exp]	24.5	0.8433

Compare expression of checked genes

Lus10025305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.