Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10320 214 / 1e-62 tRNA synthetase class I (I, L, M and V) family protein (.1) AT3G23145 64 / 4e-12 zinc ion binding;isoleucine-tRNA ligases;ATP binding;aminoacyl-tRNA ligases;nucleotide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041706 [exp] 282 / 2e-86 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10024041 [exp] 283 / 4e-86 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126501 [exp] 240 / 2e-73 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.017G033200 [exp] 236 / 4e-70 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V)
Representative CDS sequence Show only first row Show all	>Lus10025306 pacid=23157350 polypeptide=Lus10025306 locus=Lus10025306.g ID=Lus10025306.BGIv1.0 annot-version=v1.0 ATGGGGATTGCCAAATATAATGAGGAGTGTAGGAGCATCATTACTCGTTACGTTAAGGAGTGGGAGACGGTCATCACGAGGACTGGCCGCTGTATTGATT TCGATAATGGCTATAAGACTATGACGATGATGCAGGATGTATCTGATCCTGAAATTATGGTGGCCTTTCCTATTGTTGATGATCTCCATGATGCAACGTT TGTGGCCCTGACAACTATGCCCTGGACTCTTCCTAGTAATCTTGAACTTTGTGTCAACCCTACCTTGGATTATGTTAAGGTACGCAACAAGTATTCTAGA AAAGTCTATGTGATTGCAGAATGTCTATTATCCTTCATTCCCACTGAGAAGCCAAGATCAAGTGATTCAAAGACATCAAGTTCAAAGACGAAGGGTGCAA AGACTGAAAACCCAACGGATTCATATGATTTACTAGAGAAAGTCAAGGGCAAAGAACTTGTGAATAAAAAGAGTTCTCTGGCACATCATTCAGAGTTCTC TGGAATTGTTCATTGTGCTCCGGCATTTGGAGAAGATGATAACCGTGTTTGCATTGAGAATGAAATAATCAGCAAGGGAGAGAATTTAGTTGTCGTGGTT GATGAAGACGGGTGCTTTACTGTCAAGGATGCAGACAAAGTTATTATCAAGGCAGTGAAGGTTAAACCACCATTTTTCACATGGATACAAGAATGGCCAA CGTTAGTGTTCAAGTCAGAAATGCTTGTGCTGAACTATATCAAGGTTAGTTATACTCTGATGATCGCTAGAGAAGTTTCGTTGGCTCAATTTCTGAAGCT ATCGTCCAACTACTATGTTGCAGGAAATGCAAGATTTTCCCAGATGCTGCAAGTGTACTTGCTATCAAGAGATCATAGCAATTTGAAATCCGGATTTCAA CAAGGAAATGGCAAGATAAAGGTAGATTGGATCGAGAACTTGCCTGCCGTGGAATTGACGTTGGAGAAGCATTTGTAG
AA sequence Show only first row Show all	>Lus10025306 pacid=23157350 polypeptide=Lus10025306 locus=Lus10025306.g ID=Lus10025306.BGIv1.0 annot-version=v1.0 MGIAKYNEECRSIITRYVKEWETVITRTGRCIDFDNGYKTMTMMQDVSDPEIMVAFPIVDDLHDATFVALTTMPWTLPSNLELCVNPTLDYVKVRNKYSR KVYVIAECLLSFIPTEKPRSSDSKTSSSKTKGAKTENPTDSYDLLEKVKGKELVNKKSSLAHHSEFSGIVHCAPAFGEDDNRVCIENEIISKGENLVVVV DEDGCFTVKDADKVIIKAVKVKPPFFTWIQEWPTLVFKSEMLVLNYIKVSYTLMIAREVSLAQFLKLSSNYYVAGNARFSQMLQVYLLSRDHSNLKSGFQ QGNGKIKVDWIENLPAVELTLEKHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10320			tRNA synthetase class I (I, L,...		Lus10025306 [exp]	0	1
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10037367 [exp]	1.0	0.8620
					Lus10023200 [exp]	4.0	0.7704
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	6.3	0.8412
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	7.5	0.8107
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	7.7	0.7982
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10040043 [exp]	7.9	0.8122
					Lus10040877 [exp]	9.5	0.6480
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	16.7	0.7851
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10030390 [exp]	17.2	0.7679
AT1G12950		RSH2	root hair specific 2 (.1)		Lus10036853 [exp]	24.2	0.7280

Compare expression of checked genes

Lus10025306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.