Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59830 219 / 2e-65 unknown protein AT5G13660 201 / 1e-57 unknown protein AT3G53680 150 / 2e-38 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 140 / 5e-35 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 79 / 3e-15 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 77 / 2e-14 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024427 [exp] 865 / 0 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10024426 [exp] 843 / 0 AT5G59830 231 / 1e-70 unknown protein Lus10005963 [exp] 214 / 9e-60 AT5G13660 216 / 4e-60 unknown protein Lus10040857 [exp] 195 / 2e-56 AT5G59830 262 / 2e-83 unknown protein Lus10005889 [exp] 194 / 7e-56 AT5G59830 278 / 2e-89 unknown protein Lus10025315 [exp] 147 / 2e-37 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 147 / 4e-37 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 75 / 9e-14 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 72 / 8e-13 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082800 [exp] 551 / 0 AT5G13660 261 / 2e-80 unknown protein Potri.001G236000 [exp] 310 / 2e-100 AT5G59830 375 / 2e-127 unknown protein Potri.009G027800 [exp] 310 / 4e-100 AT5G59830 380 / 2e-129 unknown protein Potri.008G051300 [exp] 217 / 5e-63 AT5G13660 317 / 1e-100 unknown protein Potri.010G209300 [exp] 217 / 7e-63 AT5G13660 308 / 2e-97 unknown protein Potri.006G083600 [exp] 159 / 2e-41 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 74 / 2e-13 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 73 / 3e-13 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 70 / 2e-12 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 68 / 1e-11 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025307 pacid=23157411 polypeptide=Lus10025307 locus=Lus10025307.g ID=Lus10025307.BGIv1.0 annot-version=v1.0 ATGGCCAAAGGTGCCGGTTCCGTAAACAATGGCGATGCTAACGAAGATTCATCTAAAAGCAATTCTAAGCGTTCTAATCCGTGGTTTATGGATGGCTCTG AAGCAGAGCAGTTTCCTAACAAGAAACAGGCAGTAGGAATTCCAACCAACAATTTATTTACTGATCTCCTCACTTCAAATGTTCCTCCCAGCTGGGGTAA TCCTTCTAGTTTCCAGTCAATCTCTGGCCATTTTACCGACCGGTTATTTGATTCTGAGCCTCCCAGACCGGTAAATTTTGATGACAGAAGCATAGCCTCT GTTAGCTCTCAAAATTTTGACATGGATAGGAAGGTAGAGATCGATCCCTTCGGAAGTGGTTCATCTTTTAGTTTGTCTATGTCTCACACACTGGAAGATC CCGATCCTCGTTCTGGGTTAAACTATAGCGGGATTAGAAAAGTGAAAGTTAGTCAGGTTAAAGAGGCTGACACTGCTATGCCCGTATCTCGTGAAAATAT TTATAATAGGGTTGACTGCAATAATGTAGCAGCTACTGATTCATATGAGACAAGAGATGAAGCTTCCATATCCATGGGTCTTGCTTACACAAAAGGAAAT GGGAGCATGATGTCTGTAGGTGAATCCTATGGCCAGGATCATAGTAGCTTCATTTCAATGGGGCTTGGCTACAGTAAAACGGAGGATAACTTGTCAGAGA ATCAATCCTACAGGGAGAGCAATGATTCTCTTGCTATGAGCCATGCATTTAGCAAGGTGGACAACAATCTGGTACCTATGACACAAACCTACAATAAGGT AGAGGAGAATAGGATTTTGATCGGGAACATGTACGCTGGAGGAAGTGAGAGCACCATCTCGATGGGTCGAACCTACAACAATGGTGAAATGGCCAATTTG TCAATGGGACATGGGTATAACAAGGGAGAGAGCACCATAATATCTTTTGGTGGTTATGATGAGGATGAGTTGAATTCTTCAGGAAGGCTATTATCCACTT TTGGACTCTTGGGTCAAACTTCAATCCAAGGTCTTGGTTCAACAAATGACGGGAACTCAAATATCGGTGCCCTTGTAGCCTCAGCTCGAGCAGCTGCTTC GGGTACTGGAAGTGAGTCTAGGAAAAAAGATGACACAAAAGCACCAAAAAAAGCTCCTCCAAACAACTTCCCTTCAAATGTCAGAAGTCTGCTTTCTACT GGAATACTTGATGGAATTCAAGTGAAGTATATTGCTTGGTCAAGAGAGAAGGAGCTCCGTGGAGTGATAAGAGGTTCTGGATACCTATGTAGTTGTCAGG CAAGCAATTTTTCCAAGGTGATCAATGCATATGAATTTGAGAGGCATGCTAATTGCAAAACAAAGCACCCAAACAATCATATATATTTCGACAATGGAAA GACGATCTATGGGATTGTCCAGGAGCTAAGAAGCACTCCGCAGCATATGCTGTTTGATGTTATGCAGACAATAACCGGTTCCCCTATTAATCAGAAGTCC TTTCATCTGTGGAAAGACACTCCACTCCATTCTTCTTTTCCAGAATCCTTTATGGCTGCAACTCGCGAACTTCAGCGCATTTACTGCAGTGATGAACCAA AACCCTTGTGA
AA sequence Show only first row Show all	>Lus10025307 pacid=23157411 polypeptide=Lus10025307 locus=Lus10025307.g ID=Lus10025307.BGIv1.0 annot-version=v1.0 MAKGAGSVNNGDANEDSSKSNSKRSNPWFMDGSEAEQFPNKKQAVGIPTNNLFTDLLTSNVPPSWGNPSSFQSISGHFTDRLFDSEPPRPVNFDDRSIAS VSSQNFDMDRKVEIDPFGSGSSFSLSMSHTLEDPDPRSGLNYSGIRKVKVSQVKEADTAMPVSRENIYNRVDCNNVAATDSYETRDEASISMGLAYTKGN GSMMSVGESYGQDHSSFISMGLGYSKTEDNLSENQSYRESNDSLAMSHAFSKVDNNLVPMTQTYNKVEENRILIGNMYAGGSESTISMGRTYNNGEMANL SMGHGYNKGESTIISFGGYDEDELNSSGRLLSTFGLLGQTSIQGLGSTNDGNSNIGALVASARAAASGTGSESRKKDDTKAPKKAPPNNFPSNVRSLLST GILDGIQVKYIAWSREKELRGVIRGSGYLCSCQASNFSKVINAYEFERHANCKTKHPNNHIYFDNGKTIYGIVQELRSTPQHMLFDVMQTITGSPINQKS FHLWKDTPLHSSFPESFMAATRELQRIYCSDEPKPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59830			unknown protein		Lus10025307 [exp]	0	1
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	2.6	0.8342
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	7.7	0.8421
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	8.3	0.8608
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	11.7	0.8335
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	12.1	0.8096
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026860 [exp]	14.4	0.7624
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	17.2	0.8306
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	17.4	0.8213
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	18.3	0.7791
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10001145 [exp]	18.7	0.8023

Compare expression of checked genes

Lus10025307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.