Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37460 451 / 5e-153 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 385 / 3e-127 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 348 / 7e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08290 322 / 4e-103 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 320 / 4e-102 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 316 / 3e-100 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 314 / 4e-100 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 311 / 7e-99 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 299 / 4e-94 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 280 / 1e-86 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024424 [exp] 666 / 0 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024425 [exp] 610 / 0 AT2G37460 417 / 1e-144 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007696 [exp] 505 / 1e-173 AT2G37460 464 / 1e-163 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 401 / 2e-133 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 400 / 3e-133 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 376 / 1e-123 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 371 / 8e-122 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 361 / 6e-118 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 359 / 5e-117 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082700 [exp] 482 / 2e-165 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 400 / 5e-133 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 379 / 1e-124 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 355 / 1e-115 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 348 / 4e-113 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 335 / 2e-107 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 328 / 7e-105 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 326 / 9e-105 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G051400 [exp] 314 / 5e-100 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 302 / 7e-95 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10025308 pacid=23157365 polypeptide=Lus10025308 locus=Lus10025308.g ID=Lus10025308.BGIv1.0 annot-version=v1.0 ATGCTCAAGTCATCAAAAGGTGCTCTCTGGGGAAGATGGAAGCCATTCGTTGCTGTTACATTCCTACAAATCGGGCTGGCCGGAATGGACATTCTGTCCA AAGCCGCCCTCAACCAAGGAATGAGCAACTATGTCCTCGTTGTCTATCGACATGCCTTTGCCACCCTTGTCATTGCCCCTTTCGCCCTTCTCCTCGACAA GAAAGTGAGGCCCAAAATGACGTGGTCGATATTCATTAAAGTAATGGCGCTCGGCTTACTGGAGCCAGTGATAGACCAAAACTTGTACTTCCTAGGGATG AAGTACACAACAGCAACCTTCGCGGCAGCAATCATCAACATCCTTCCTGCTATCACTTTCATTATGGCGTGGATAGTCGGGATGGAGAAGGTTCGGATGA AGTCGGTCCATAGTCAAGCCAAAGTGATGGGAACGATAGCTACGGTGGGAGGAGCGATGGTGATGACGATGATCAAAGGTCCAGTTGTCGAGTTCTTCTG GACGAAAGGAAGGAGCTTTCATGGCCTAGGAGGAGCAGCTGGTGGAGTAGACCTCCATAGCTCAATCAAGGGTGCTCTCATGATCACTGTAGGGGCCTTC AGCTGGGCTGGTTTTGTCATTTTACAGGCGATCACACTGAATACGTATCCGGCTGAGCTTTCTTTGACGGCGTTAATTTGCCTGATGGGTACAATAGAAG GAGCTGCAGTGGCACTAGTGATGGAGAGAGGGAACCCTCAAGTCTGGATTCTTCACTGGGACACTAAACTACTCGCAGCAGTATATAGCGGAGTGGTGTG TTCAGGATTTGCGTATTACATACAAGGAGTGGTGATGAAAGAGAGAGGTCCAGTTTTCGTGACAGCTTTCAGTCCACTTTGCATGGTTGTGGTGGCTGTA ATGAGCTCCATCATTTTTGCTGAACAAATGTTCCTTGGAAGGGTAATAGGAGCTGGAATCATAGTAGCAGGGCTGTACCTCGTTGTTTGGGGTAAAAGCA AGGACTATGCTTCTGAACAACAACAACAAGTAGTGATGATTCTTCCAAGCAGTTTGACAGCAGCTGGAAATGATGGATCGTGTTGTGATGATCACGATCA TGATCATCATCAGCCACAGCAACATAGTTTGCATCAACCAAATAGTGGAGTGCTATGGAGAAGATGGAAGCCCCTCATTCTGATAACAATGCTGCAAGTT GGGCTAGCTGGAATGGACATTCTGTCAAAGGCTGCCCTCAATCAAGGCATGAGCAACTATGTTCTCGTTGTCTATTGCCATGCCTTCGCCACCCTCGTCT TTTCTCCTTTCGCCCTCTTTTTCGACCGGAAAGTGAGGCCTAAGATGACATGGTCTATATTCTTCAAGATAACGGTCCTCGGATTGCTCGAGCCAGTAAT AGACCAAAACCTGTACTTCCTGGGAATGAAGTACACCACGGCAACATTTGCCGCTGCCATAGTCAACATGCTTCCTGCAATAACATTTCTCATGGCGTGT CTTGTCGGGCTTGAGAAAATTCGAGTAAAGTCGGTCCACAGCCAGGCGAAAGTGGTTGGAACAGTAGCAACGGTTGCAGGAGCCATGGTTATGATAATCA TCAAAGGTCCAGTGGTGGAGTTGTTCTGGAGTAAAGGAAGGAGGTTCTATGGCCAGGGAGGAGGAAGCAGTAGCGGCGGGGAGATTGACCTTCATAGCTC CGTTAAAGGTTCCCTAATGATAATGGCTGGCTCCTGCAGTTGCGCTGCTTTCGTGATTTTGCAGGCAATCACAATGAAGACTTATCCAGCAGAGCTGTCG CTGACGGCTCTGATATGCCTTATGGGTGCAATAGAAGGGAGCATCGTGGCAGTTGTGATGGAGAGAGGGAATCCCCAAGTGTGGGCTCTTCACTGGGACA CCAAATTGCTCGCTACAGCTTATAATGGAGTGGTTTGTGCAGGACTGACATACTACATTCAAGGGGTGGTGATGAAAGAGAGAGGCCCGGTTTTCGCCAC AGCTTTTAGCCCCCTGTGCATGATTGTGGTGGCAATCGTGAGCTCCGTCATTTTTGCAGAACAGATGTTCCTCGGAAGGGTGGTTGGAGCTGCAGTCATT GTAGCAGGGTTGTACCTTGTCATTTGGGGCAAAACGAAGGACCATGATGATAATTCTCCGATGGCAAAAGCTAATGCTGATAAACAAGGGATTTCAACAA TTGAGACGCGGGATGCATCTTGTGGCGATGGAGGACAAAATCGCAGTCATAATCAGCATCATGGTGTGACAATTGAAGCAGCTGCTTCTTCTTCATCTGA GGCAACACTGGCCCGGAATGAAACATCAACTGATCATGCTAGTCATAATCTACATGCTGTATAA
AA sequence Show only first row Show all	>Lus10025308 pacid=23157365 polypeptide=Lus10025308 locus=Lus10025308.g ID=Lus10025308.BGIv1.0 annot-version=v1.0 MLKSSKGALWGRWKPFVAVTFLQIGLAGMDILSKAALNQGMSNYVLVVYRHAFATLVIAPFALLLDKKVRPKMTWSIFIKVMALGLLEPVIDQNLYFLGM KYTTATFAAAIINILPAITFIMAWIVGMEKVRMKSVHSQAKVMGTIATVGGAMVMTMIKGPVVEFFWTKGRSFHGLGGAAGGVDLHSSIKGALMITVGAF SWAGFVILQAITLNTYPAELSLTALICLMGTIEGAAVALVMERGNPQVWILHWDTKLLAAVYSGVVCSGFAYYIQGVVMKERGPVFVTAFSPLCMVVVAV MSSIIFAEQMFLGRVIGAGIIVAGLYLVVWGKSKDYASEQQQQVVMILPSSLTAAGNDGSCCDDHDHDHHQPQQHSLHQPNSGVLWRRWKPLILITMLQV GLAGMDILSKAALNQGMSNYVLVVYCHAFATLVFSPFALFFDRKVRPKMTWSIFFKITVLGLLEPVIDQNLYFLGMKYTTATFAAAIVNMLPAITFLMAC LVGLEKIRVKSVHSQAKVVGTVATVAGAMVMIIIKGPVVELFWSKGRRFYGQGGGSSSGGEIDLHSSVKGSLMIMAGSCSCAAFVILQAITMKTYPAELS LTALICLMGAIEGSIVAVVMERGNPQVWALHWDTKLLATAYNGVVCAGLTYYIQGVVMKERGPVFATAFSPLCMIVVAIVSSVIFAEQMFLGRVVGAAVI VAGLYLVIWGKTKDHDDNSPMAKANADKQGISTIETRDASCGDGGQNRSHNQHHGVTIEAAASSSSEATLARNETSTDHASHNLHAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10025308 [exp]	0	1
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	8.8	0.8733
AT5G66900			Disease resistance protein (CC...		Lus10020779 [exp]	9.4	0.8862
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	12.1	0.8832
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10015550 [exp]	13.2	0.8326
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10021872 [exp]	13.4	0.8298
AT5G14500			aldose 1-epimerase family prot...		Lus10014621 [exp]	20.1	0.8593
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	22.1	0.8705
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	26.7	0.8604
AT1G79910			Regulator of Vps4 activity in ...		Lus10025779 [exp]	26.9	0.8593
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	32.5	0.8481

Compare expression of checked genes

Lus10025308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.